Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24165

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24160 and BPHYT_RS24165 are separated by 51 nucleotidesBPHYT_RS24165 and BPHYT_RS24170 overlap by 4 nucleotides BPHYT_RS24160: BPHYT_RS24160 - D-galactarate dehydratase, at 988,328 to 989,917 _RS24160 BPHYT_RS24165: BPHYT_RS24165 - NAD-dependent dehydratase, at 989,969 to 990,811 _RS24165 BPHYT_RS24170: BPHYT_RS24170 - gluconolactonase, at 990,808 to 991,737 _RS24170 Position (kb) 989 990 991Strain fitness (log2 ratio) -3 -2 -1 0 1at 989.399 kb on + strand, within BPHYT_RS24160at 989.409 kb on - strand, within BPHYT_RS24160at 989.676 kb on - strand, within BPHYT_RS24160at 989.962 kb on + strandat 989.963 kb on - strandat 989.963 kb on - strandat 989.963 kb on - strandat 990.278 kb on + strand, within BPHYT_RS24165at 990.449 kb on + strand, within BPHYT_RS24165at 990.452 kb on + strand, within BPHYT_RS24165at 990.615 kb on - strand, within BPHYT_RS24165at 991.342 kb on + strand, within BPHYT_RS24170at 991.343 kb on - strand, within BPHYT_RS24170at 991.343 kb on - strand, within BPHYT_RS24170

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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989,399 + BPHYT_RS24160 0.67 +0.3
989,409 - BPHYT_RS24160 0.68 +0.0
989,676 - BPHYT_RS24160 0.85 -0.9
989,962 + +0.4
989,963 - +1.4
989,963 - +0.8
989,963 - +0.1
990,278 + BPHYT_RS24165 0.37 -0.1
990,449 + BPHYT_RS24165 0.57 -0.4
990,452 + BPHYT_RS24165 0.57 -0.2
990,615 - BPHYT_RS24165 0.77 +1.1
991,342 + BPHYT_RS24170 0.57 -2.8
991,343 - BPHYT_RS24170 0.58 +0.6
991,343 - BPHYT_RS24170 0.58 -0.0

Or see this region's nucleotide sequence