Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22925 and BPHYT_RS22930 are separated by 43 nucleotides BPHYT_RS22930 and BPHYT_RS22935 are separated by 26 nucleotides BPHYT_RS22935 and BPHYT_RS22940 overlap by 4 nucleotides
BPHYT_RS22925: BPHYT_RS22925 - pilus assembly protein TadB, at 702,385 to 703,362
_RS22925
BPHYT_RS22930: BPHYT_RS22930 - type II secretion system protein, at 703,406 to 704,362
_RS22930
BPHYT_RS22935: BPHYT_RS22935 - fatty acid hydroxylase, at 704,389 to 705,255
_RS22935
BPHYT_RS22940: BPHYT_RS22940 - pilus assembly protein TadE, at 705,252 to 705,782
_RS22940
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1
2 at 702.688 kb on + strand, within BPHYT_RS22925 at 702.689 kb on - strand, within BPHYT_RS22925 at 702.689 kb on - strand, within BPHYT_RS22925 at 702.930 kb on - strand, within BPHYT_RS22925 at 703.835 kb on + strand, within BPHYT_RS22930 at 704.175 kb on - strand, within BPHYT_RS22930 at 704.374 kb on - strand at 704.563 kb on + strand, within BPHYT_RS22935 at 704.563 kb on + strand, within BPHYT_RS22935 at 704.742 kb on + strand, within BPHYT_RS22935 at 704.743 kb on - strand, within BPHYT_RS22935 at 704.743 kb on - strand, within BPHYT_RS22935 at 704.743 kb on - strand, within BPHYT_RS22935 at 704.857 kb on + strand, within BPHYT_RS22935 at 704.936 kb on - strand, within BPHYT_RS22935
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 702,688 + BPHYT_RS22925 0.31 -1.9 702,689 - BPHYT_RS22925 0.31 +0.6 702,689 - BPHYT_RS22925 0.31 -0.2 702,930 - BPHYT_RS22925 0.56 +0.8 703,835 + BPHYT_RS22930 0.45 -2.2 704,175 - BPHYT_RS22930 0.80 +2.2 704,374 - -0.9 704,563 + BPHYT_RS22935 0.20 +0.1 704,563 + BPHYT_RS22935 0.20 -1.4 704,742 + BPHYT_RS22935 0.41 -0.0 704,743 - BPHYT_RS22935 0.41 -0.5 704,743 - BPHYT_RS22935 0.41 +0.3 704,743 - BPHYT_RS22935 0.41 +0.4 704,857 + BPHYT_RS22935 0.54 +0.6 704,936 - BPHYT_RS22935 0.63 -0.2
Or see this region's nucleotide sequence