Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22155 and BPHYT_RS22160 overlap by 4 nucleotides BPHYT_RS22160 and BPHYT_RS22165 are separated by 100 nucleotides BPHYT_RS22165 and BPHYT_RS22170 are separated by 47 nucleotides BPHYT_RS22170 and BPHYT_RS22175 are separated by 341 nucleotides
BPHYT_RS22155: BPHYT_RS22155 - carbon-nitrogen hydrolase, at 532,475 to 533,350
_RS22155
BPHYT_RS22160: BPHYT_RS22160 - FKBP-type peptidylprolyl isomerase, at 533,347 to 533,748
_RS22160
BPHYT_RS22165: BPHYT_RS22165 - hypothetical protein, at 533,849 to 534,310
_RS22165
BPHYT_RS22170: BPHYT_RS22170 - hypothetical protein, at 534,358 to 534,588
_RS22170
BPHYT_RS22175: BPHYT_RS22175 - hypothetical protein, at 534,930 to 536,003
_RS22175
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 532.853 kb on + strand, within BPHYT_RS22155 at 532.860 kb on - strand, within BPHYT_RS22155 at 532.880 kb on + strand, within BPHYT_RS22155 at 533.090 kb on + strand, within BPHYT_RS22155 at 533.090 kb on + strand, within BPHYT_RS22155 at 533.091 kb on - strand, within BPHYT_RS22155 at 533.312 kb on + strand at 533.328 kb on - strand at 533.492 kb on + strand at 533.493 kb on - strand, within BPHYT_RS22160 at 533.493 kb on - strand, within BPHYT_RS22160 at 533.840 kb on - strand at 534.190 kb on - strand, within BPHYT_RS22165 at 534.295 kb on + strand at 534.387 kb on + strand, within BPHYT_RS22170 at 534.698 kb on + strand at 534.699 kb on - strand at 534.699 kb on - strand at 534.842 kb on - strand at 534.963 kb on - strand at 535.027 kb on - strand at 535.054 kb on + strand, within BPHYT_RS22175 at 535.125 kb on - strand, within BPHYT_RS22175
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 532,853 + BPHYT_RS22155 0.43 -0.9 532,860 - BPHYT_RS22155 0.44 -1.6 532,880 + BPHYT_RS22155 0.46 +1.3 533,090 + BPHYT_RS22155 0.70 +0.7 533,090 + BPHYT_RS22155 0.70 +1.6 533,091 - BPHYT_RS22155 0.70 -1.4 533,312 + -0.2 533,328 - -3.2 533,492 + +0.9 533,493 - BPHYT_RS22160 0.36 +0.3 533,493 - BPHYT_RS22160 0.36 +0.7 533,840 - +0.4 534,190 - BPHYT_RS22165 0.74 +0.9 534,295 + +1.3 534,387 + BPHYT_RS22170 0.13 -3.4 534,698 + -0.4 534,699 - +0.5 534,699 - -0.4 534,842 - -1.0 534,963 - -2.5 535,027 - +0.5 535,054 + BPHYT_RS22175 0.12 +0.0 535,125 - BPHYT_RS22175 0.18 +0.7
Or see this region's nucleotide sequence