Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22040 and BPHYT_RS22045 are separated by 3 nucleotides BPHYT_RS22045 and BPHYT_RS22050 are separated by 17 nucleotides BPHYT_RS22050 and BPHYT_RS22055 are separated by 181 nucleotides
BPHYT_RS22040: BPHYT_RS22040 - peptide ABC transporter permease, at 499,983 to 500,897
_RS22040
BPHYT_RS22045: BPHYT_RS22045 - peptide ABC transporter permease, at 500,901 to 501,839
_RS22045
BPHYT_RS22050: BPHYT_RS22050 - peptide ABC transporter substrate-binding protein, at 501,857 to 503,473
_RS22050
BPHYT_RS22055: BPHYT_RS22055 - DNA-binding protein, at 503,655 to 504,227
_RS22055
Position (kb) 501
502
503
504 Strain fitness (log2 ratio) -2
-1
0
1 at 500.933 kb on - strand at 501.652 kb on + strand, within BPHYT_RS22045 at 501.683 kb on - strand, within BPHYT_RS22045 at 501.683 kb on - strand, within BPHYT_RS22045 at 501.828 kb on - strand at 501.873 kb on + strand at 501.873 kb on + strand at 501.874 kb on - strand at 501.874 kb on - strand at 501.903 kb on + strand at 501.932 kb on - strand at 501.982 kb on - strand at 502.090 kb on - strand, within BPHYT_RS22050 at 502.153 kb on - strand, within BPHYT_RS22050 at 502.221 kb on + strand, within BPHYT_RS22050 at 502.576 kb on + strand, within BPHYT_RS22050 at 502.587 kb on + strand, within BPHYT_RS22050 at 502.587 kb on + strand, within BPHYT_RS22050 at 502.588 kb on - strand, within BPHYT_RS22050 at 502.590 kb on + strand, within BPHYT_RS22050 at 502.594 kb on - strand, within BPHYT_RS22050 at 502.836 kb on + strand, within BPHYT_RS22050 at 503.118 kb on + strand, within BPHYT_RS22050 at 503.640 kb on + strand at 504.063 kb on - strand, within BPHYT_RS22055 at 504.193 kb on - strand at 504.263 kb on + strand at 504.264 kb on - strand at 504.266 kb on - strand at 504.266 kb on - strand at 504.266 kb on - strand at 504.270 kb on - strand at 504.270 kb on - strand at 504.274 kb on - strand at 504.358 kb on - strand at 504.358 kb on - strand at 504.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 500,933 - +1.5 501,652 + BPHYT_RS22045 0.80 +1.3 501,683 - BPHYT_RS22045 0.83 +1.5 501,683 - BPHYT_RS22045 0.83 +0.9 501,828 - -1.5 501,873 + -0.9 501,873 + +1.5 501,874 - -0.4 501,874 - +0.7 501,903 + +1.7 501,932 - -2.4 501,982 - +0.4 502,090 - BPHYT_RS22050 0.14 +0.4 502,153 - BPHYT_RS22050 0.18 -0.3 502,221 + BPHYT_RS22050 0.23 -0.8 502,576 + BPHYT_RS22050 0.44 -0.6 502,587 + BPHYT_RS22050 0.45 +0.5 502,587 + BPHYT_RS22050 0.45 +0.6 502,588 - BPHYT_RS22050 0.45 +0.8 502,590 + BPHYT_RS22050 0.45 -0.7 502,594 - BPHYT_RS22050 0.46 +1.5 502,836 + BPHYT_RS22050 0.61 +0.5 503,118 + BPHYT_RS22050 0.78 +1.7 503,640 + -1.6 504,063 - BPHYT_RS22055 0.71 +0.5 504,193 - +0.7 504,263 + -1.9 504,264 - -2.3 504,266 - +0.2 504,266 - +0.3 504,266 - -0.2 504,270 - +0.3 504,270 - -0.3 504,274 - -0.2 504,358 - -0.4 504,358 - +0.9 504,441 - +0.5
Or see this region's nucleotide sequence