Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22030 and BPHYT_RS22035 overlap by 4 nucleotides BPHYT_RS22035 and BPHYT_RS22040 are separated by 1 nucleotides BPHYT_RS22040 and BPHYT_RS22045 are separated by 3 nucleotides BPHYT_RS22045 and BPHYT_RS22050 are separated by 17 nucleotides
BPHYT_RS22030: BPHYT_RS22030 - peptide ABC transporter ATP-binding protein, at 497,961 to 498,986
_RS22030
BPHYT_RS22035: BPHYT_RS22035 - peptide ABC transporter ATP-binding protein, at 498,983 to 499,981
_RS22035
BPHYT_RS22040: BPHYT_RS22040 - peptide ABC transporter permease, at 499,983 to 500,897
_RS22040
BPHYT_RS22045: BPHYT_RS22045 - peptide ABC transporter permease, at 500,901 to 501,839
_RS22045
BPHYT_RS22050: BPHYT_RS22050 - peptide ABC transporter substrate-binding protein, at 501,857 to 503,473
_RS22050
Position (kb) 499
500
501 Strain fitness (log2 ratio) -1
0
1 at 498.986 kb on + strand at 498.986 kb on + strand at 498.986 kb on + strand at 498.987 kb on - strand at 498.987 kb on - strand at 498.987 kb on - strand at 500.041 kb on + strand at 500.219 kb on - strand, within BPHYT_RS22040 at 500.446 kb on + strand, within BPHYT_RS22040 at 500.447 kb on - strand, within BPHYT_RS22040 at 500.447 kb on - strand, within BPHYT_RS22040 at 500.459 kb on - strand, within BPHYT_RS22040 at 500.933 kb on - strand at 501.652 kb on + strand, within BPHYT_RS22045 at 501.683 kb on - strand, within BPHYT_RS22045 at 501.683 kb on - strand, within BPHYT_RS22045 at 501.828 kb on - strand at 501.873 kb on + strand at 501.873 kb on + strand at 501.874 kb on - strand at 501.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 498,986 + -1.2 498,986 + -0.1 498,986 + -0.5 498,987 - -0.3 498,987 - +0.5 498,987 - +0.9 500,041 + +0.5 500,219 - BPHYT_RS22040 0.26 +0.5 500,446 + BPHYT_RS22040 0.51 +1.6 500,447 - BPHYT_RS22040 0.51 +0.6 500,447 - BPHYT_RS22040 0.51 +0.5 500,459 - BPHYT_RS22040 0.52 +0.6 500,933 - +1.5 501,652 + BPHYT_RS22045 0.80 +1.3 501,683 - BPHYT_RS22045 0.83 +1.5 501,683 - BPHYT_RS22045 0.83 +0.9 501,828 - -1.5 501,873 + -0.9 501,873 + +1.5 501,874 - -0.4 501,874 - +0.7
Or see this region's nucleotide sequence