Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22020 and BPHYT_RS22025 are separated by 51 nucleotides BPHYT_RS22025 and BPHYT_RS22030 are separated by 176 nucleotides
BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143
_RS22020
BPHYT_RS22025: BPHYT_RS22025 - porin, at 496,195 to 497,784
_RS22025
BPHYT_RS22030: BPHYT_RS22030 - peptide ABC transporter ATP-binding protein, at 497,961 to 498,986
_RS22030
Position (kb) 496
497
498 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 495.226 kb on - strand at 495.572 kb on + strand, within BPHYT_RS22020 at 495.841 kb on + strand, within BPHYT_RS22020 at 496.262 kb on + strand at 496.332 kb on - strand at 496.506 kb on - strand, within BPHYT_RS22025 at 496.522 kb on - strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.587 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.748 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.851 kb on - strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.928 kb on + strand, within BPHYT_RS22025 at 497.109 kb on - strand, within BPHYT_RS22025 at 497.148 kb on - strand, within BPHYT_RS22025 at 497.342 kb on + strand, within BPHYT_RS22025 at 497.375 kb on + strand, within BPHYT_RS22025 at 497.640 kb on + strand at 497.681 kb on + strand at 497.789 kb on + strand at 497.963 kb on - strand at 498.200 kb on - strand, within BPHYT_RS22030 at 498.221 kb on - strand, within BPHYT_RS22030 at 498.263 kb on - strand, within BPHYT_RS22030 at 498.693 kb on - strand, within BPHYT_RS22030
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 495,226 - -0.7 495,572 + BPHYT_RS22020 0.35 +0.2 495,841 + BPHYT_RS22020 0.66 +1.0 496,262 + +2.7 496,332 - -1.3 496,506 - BPHYT_RS22025 0.20 +0.3 496,522 - BPHYT_RS22025 0.21 -0.4 496,559 + BPHYT_RS22025 0.23 +1.4 496,559 + BPHYT_RS22025 0.23 +0.5 496,587 - BPHYT_RS22025 0.25 +1.2 496,591 - BPHYT_RS22025 0.25 +1.0 496,591 - BPHYT_RS22025 0.25 -0.1 496,748 + BPHYT_RS22025 0.35 -0.1 496,850 + BPHYT_RS22025 0.41 -0.3 496,850 + BPHYT_RS22025 0.41 -1.9 496,851 - BPHYT_RS22025 0.41 +0.0 496,898 + BPHYT_RS22025 0.44 -4.5 496,898 + BPHYT_RS22025 0.44 -1.1 496,898 + BPHYT_RS22025 0.44 -1.5 496,928 + BPHYT_RS22025 0.46 -0.2 497,109 - BPHYT_RS22025 0.57 +0.8 497,148 - BPHYT_RS22025 0.60 +0.7 497,342 + BPHYT_RS22025 0.72 +1.3 497,375 + BPHYT_RS22025 0.74 +2.4 497,640 + -0.3 497,681 + +0.4 497,789 + +1.0 497,963 - +0.4 498,200 - BPHYT_RS22030 0.23 +0.4 498,221 - BPHYT_RS22030 0.25 +1.7 498,263 - BPHYT_RS22030 0.29 +0.3 498,693 - BPHYT_RS22030 0.71 +4.0
Or see this region's nucleotide sequence