Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22005 and BPHYT_RS22010 are separated by 39 nucleotides BPHYT_RS22010 and BPHYT_RS22015 overlap by 8 nucleotides BPHYT_RS22015 and BPHYT_RS22020 are separated by 303 nucleotides
BPHYT_RS22005: BPHYT_RS22005 - ABC transporter permease, at 492,129 to 492,923
_RS22005
BPHYT_RS22010: BPHYT_RS22010 - ABC transporter permease, at 492,963 to 493,877
_RS22010
BPHYT_RS22015: BPHYT_RS22015 - spermidine/putrescine ABC transporter ATPase, at 493,870 to 494,961
_RS22015
BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143
_RS22020
Position (kb) 493
494
495 Strain fitness (log2 ratio) -2
-1
0
1 at 493.006 kb on + strand at 493.470 kb on + strand, within BPHYT_RS22010 at 493.549 kb on + strand, within BPHYT_RS22010 at 493.550 kb on - strand, within BPHYT_RS22010 at 493.569 kb on + strand, within BPHYT_RS22010 at 493.630 kb on + strand, within BPHYT_RS22010 at 493.634 kb on - strand, within BPHYT_RS22010 at 494.307 kb on - strand, within BPHYT_RS22015 at 494.325 kb on + strand, within BPHYT_RS22015 at 494.590 kb on - strand, within BPHYT_RS22015 at 495.104 kb on + strand at 495.105 kb on - strand at 495.226 kb on - strand at 495.572 kb on + strand, within BPHYT_RS22020 at 495.841 kb on + strand, within BPHYT_RS22020
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 493,006 + -0.3 493,470 + BPHYT_RS22010 0.55 -1.4 493,549 + BPHYT_RS22010 0.64 -2.3 493,550 - BPHYT_RS22010 0.64 +1.0 493,569 + BPHYT_RS22010 0.66 +0.3 493,630 + BPHYT_RS22010 0.73 -0.3 493,634 - BPHYT_RS22010 0.73 -0.3 494,307 - BPHYT_RS22015 0.40 +0.5 494,325 + BPHYT_RS22015 0.42 -0.4 494,590 - BPHYT_RS22015 0.66 -2.5 495,104 + -1.7 495,105 - +1.2 495,226 - -0.7 495,572 + BPHYT_RS22020 0.35 +0.2 495,841 + BPHYT_RS22020 0.66 +1.0
Or see this region's nucleotide sequence