Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21785 and BPHYT_RS21790 are separated by 88 nucleotides BPHYT_RS21790 and BPHYT_RS21795 are separated by 407 nucleotides BPHYT_RS21795 and BPHYT_RS21800 are separated by 39 nucleotides BPHYT_RS21800 and BPHYT_RS21805 are separated by 200 nucleotides
BPHYT_RS21785: BPHYT_RS21785 - hypothetical protein, at 444,824 to 445,156
_RS21785
BPHYT_RS21790: BPHYT_RS21790 - hypothetical protein, at 445,245 to 445,583
_RS21790
BPHYT_RS21795: BPHYT_RS21795 - membrane protein, at 445,991 to 447,550
_RS21795
BPHYT_RS21800: BPHYT_RS21800 - hypothetical protein, at 447,590 to 447,892
_RS21800
BPHYT_RS21805: BPHYT_RS21805 - transcriptional regulator, at 448,093 to 448,773
_RS21805
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 445.117 kb on + strand, within BPHYT_RS21785 at 445.146 kb on - strand at 445.289 kb on + strand, within BPHYT_RS21790 at 445.290 kb on - strand, within BPHYT_RS21790 at 445.570 kb on - strand at 445.711 kb on - strand at 445.858 kb on + strand at 448.247 kb on + strand, within BPHYT_RS21805 at 448.248 kb on - strand, within BPHYT_RS21805 at 448.248 kb on - strand, within BPHYT_RS21805
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 445,117 + BPHYT_RS21785 0.88 -0.8 445,146 - -3.4 445,289 + BPHYT_RS21790 0.13 -0.2 445,290 - BPHYT_RS21790 0.13 -2.9 445,570 - -1.0 445,711 - +0.0 445,858 + -0.5 448,247 + BPHYT_RS21805 0.23 +1.3 448,248 - BPHYT_RS21805 0.23 -1.5 448,248 - BPHYT_RS21805 0.23 -0.5
Or see this region's nucleotide sequence