Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21785

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21780 and BPHYT_RS21785 are separated by 439 nucleotidesBPHYT_RS21785 and BPHYT_RS21790 are separated by 88 nucleotidesBPHYT_RS21790 and BPHYT_RS21795 are separated by 407 nucleotides BPHYT_RS21780: BPHYT_RS21780 - MFS transporter, at 443,002 to 444,384 _RS21780 BPHYT_RS21785: BPHYT_RS21785 - hypothetical protein, at 444,824 to 445,156 _RS21785 BPHYT_RS21790: BPHYT_RS21790 - hypothetical protein, at 445,245 to 445,583 _RS21790 BPHYT_RS21795: BPHYT_RS21795 - membrane protein, at 445,991 to 447,550 _RS21795 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 443.876 kb on - strand, within BPHYT_RS21780at 444.074 kb on - strand, within BPHYT_RS21780at 444.189 kb on + strand, within BPHYT_RS21780at 444.539 kb on + strandat 444.673 kb on - strandat 445.117 kb on + strand, within BPHYT_RS21785at 445.146 kb on - strandat 445.289 kb on + strand, within BPHYT_RS21790at 445.290 kb on - strand, within BPHYT_RS21790at 445.570 kb on - strandat 445.711 kb on - strandat 445.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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443,876 - BPHYT_RS21780 0.63 -1.0
444,074 - BPHYT_RS21780 0.78 -1.9
444,189 + BPHYT_RS21780 0.86 -0.5
444,539 + -0.9
444,673 - +1.9
445,117 + BPHYT_RS21785 0.88 -0.8
445,146 - -3.4
445,289 + BPHYT_RS21790 0.13 -0.2
445,290 - BPHYT_RS21790 0.13 -2.9
445,570 - -1.0
445,711 - +0.0
445,858 + -0.5

Or see this region's nucleotide sequence