Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21385

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21380 and BPHYT_RS21385 are separated by 206 nucleotidesBPHYT_RS21385 and BPHYT_RS21390 are separated by 266 nucleotides BPHYT_RS21380: BPHYT_RS21380 - nuclease PIN, at 355,696 to 357,282 _RS21380 BPHYT_RS21385: BPHYT_RS21385 - short-chain dehydrogenase, at 357,489 to 358,082 _RS21385 BPHYT_RS21390: BPHYT_RS21390 - metal-binding protein, at 358,349 to 359,230 _RS21390 Position (kb) 357 358 359Strain fitness (log2 ratio) -1 0 1at 356.601 kb on - strand, within BPHYT_RS21380at 357.167 kb on - strandat 357.182 kb on + strandat 357.935 kb on - strand, within BPHYT_RS21385at 358.082 kb on + strandat 358.246 kb on - strandat 358.439 kb on + strand, within BPHYT_RS21390at 358.440 kb on - strand, within BPHYT_RS21390at 358.608 kb on + strand, within BPHYT_RS21390at 358.610 kb on + strand, within BPHYT_RS21390at 358.610 kb on + strand, within BPHYT_RS21390at 358.610 kb on + strand, within BPHYT_RS21390at 358.610 kb on + strand, within BPHYT_RS21390at 358.611 kb on - strand, within BPHYT_RS21390at 358.611 kb on - strand, within BPHYT_RS21390at 358.612 kb on + strand, within BPHYT_RS21390at 358.613 kb on - strand, within BPHYT_RS21390at 358.613 kb on - strand, within BPHYT_RS21390at 358.613 kb on - strand, within BPHYT_RS21390at 358.946 kb on + strand, within BPHYT_RS21390at 358.947 kb on - strand, within BPHYT_RS21390

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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356,601 - BPHYT_RS21380 0.57 +1.5
357,167 - -0.6
357,182 + +0.5
357,935 - BPHYT_RS21385 0.75 -1.7
358,082 + -0.9
358,246 - -0.3
358,439 + BPHYT_RS21390 0.10 +0.8
358,440 - BPHYT_RS21390 0.10 +0.3
358,608 + BPHYT_RS21390 0.29 +0.8
358,610 + BPHYT_RS21390 0.30 +0.3
358,610 + BPHYT_RS21390 0.30 -0.0
358,610 + BPHYT_RS21390 0.30 +0.3
358,610 + BPHYT_RS21390 0.30 +0.7
358,611 - BPHYT_RS21390 0.30 +0.3
358,611 - BPHYT_RS21390 0.30 -1.2
358,612 + BPHYT_RS21390 0.30 +1.7
358,613 - BPHYT_RS21390 0.30 -0.3
358,613 - BPHYT_RS21390 0.30 -1.6
358,613 - BPHYT_RS21390 0.30 -0.2
358,946 + BPHYT_RS21390 0.68 -0.5
358,947 - BPHYT_RS21390 0.68 +0.1

Or see this region's nucleotide sequence