Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21180

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21175 and BPHYT_RS21180 are separated by 891 nucleotides BPHYT_RS21175: BPHYT_RS21175 - transposase, at 310,957 to 311,538 _RS21175 BPHYT_RS21180: BPHYT_RS21180 - hypothetical protein, at 312,430 to 313,455 _RS21180 Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 311.823 kb on + strandat 311.824 kb on - strandat 311.824 kb on - strandat 311.824 kb on - strandat 311.824 kb on - strandat 311.974 kb on - strandat 312.889 kb on + strand, within BPHYT_RS21180at 313.830 kb on - strandat 314.014 kb on - strandat 314.079 kb on - strandat 314.090 kb on - strandat 314.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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311,823 + +1.9
311,824 - -0.9
311,824 - -0.2
311,824 - +1.5
311,824 - +1.0
311,974 - +1.8
312,889 + BPHYT_RS21180 0.45 -0.2
313,830 - -0.8
314,014 - -2.2
314,079 - -2.5
314,090 - +0.4
314,167 - -0.7

Or see this region's nucleotide sequence