Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21175

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21170 and BPHYT_RS21175 are separated by 125 nucleotidesBPHYT_RS21175 and BPHYT_RS21180 are separated by 891 nucleotides BPHYT_RS21170: BPHYT_RS21170 - LysR family transcriptional regulator, at 309,881 to 310,831 _RS21170 BPHYT_RS21175: BPHYT_RS21175 - transposase, at 310,957 to 311,538 _RS21175 BPHYT_RS21180: BPHYT_RS21180 - hypothetical protein, at 312,430 to 313,455 _RS21180 Position (kb) 310 311 312Strain fitness (log2 ratio) -1 0 1 2at 310.081 kb on + strand, within BPHYT_RS21170at 310.391 kb on + strand, within BPHYT_RS21170at 310.984 kb on - strandat 311.406 kb on + strand, within BPHYT_RS21175at 311.823 kb on + strandat 311.824 kb on - strandat 311.824 kb on - strandat 311.824 kb on - strandat 311.824 kb on - strandat 311.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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310,081 + BPHYT_RS21170 0.21 +1.6
310,391 + BPHYT_RS21170 0.54 +0.9
310,984 - +0.7
311,406 + BPHYT_RS21175 0.77 +0.7
311,823 + +1.9
311,824 - -0.9
311,824 - -0.2
311,824 - +1.5
311,824 - +1.0
311,974 - +1.8

Or see this region's nucleotide sequence