Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20840

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20835 and BPHYT_RS20840 are separated by 97 nucleotidesBPHYT_RS20840 and BPHYT_RS20845 are separated by 148 nucleotides BPHYT_RS20835: BPHYT_RS20835 - pyridoxal 4-dehydrogenase, at 236,940 to 237,956 _RS20835 BPHYT_RS20840: BPHYT_RS20840 - beta-lactamase, at 238,054 to 239,124 _RS20840 BPHYT_RS20845: BPHYT_RS20845 - peroxidase, at 239,273 to 239,929 _RS20845 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1at 237.813 kb on - strand, within BPHYT_RS20835at 237.824 kb on + strand, within BPHYT_RS20835at 237.825 kb on - strand, within BPHYT_RS20835at 238.469 kb on - strand, within BPHYT_RS20840at 238.906 kb on + strand, within BPHYT_RS20840at 238.969 kb on - strand, within BPHYT_RS20840at 239.030 kb on - strandat 239.085 kb on - strandat 239.197 kb on + strandat 239.399 kb on + strand, within BPHYT_RS20845at 239.457 kb on - strand, within BPHYT_RS20845at 239.934 kb on - strandat 239.942 kb on + strandat 240.069 kb on - strandat 240.069 kb on - strandat 240.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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237,813 - BPHYT_RS20835 0.86 -3.4
237,824 + BPHYT_RS20835 0.87 +0.3
237,825 - BPHYT_RS20835 0.87 -1.6
238,469 - BPHYT_RS20840 0.39 +1.1
238,906 + BPHYT_RS20840 0.80 -2.1
238,969 - BPHYT_RS20840 0.85 +0.6
239,030 - -0.0
239,085 - -0.7
239,197 + +0.3
239,399 + BPHYT_RS20845 0.19 +1.6
239,457 - BPHYT_RS20845 0.28 -2.2
239,934 - -1.7
239,942 + +1.1
240,069 - -1.2
240,069 - -0.4
240,069 - +0.8

Or see this region's nucleotide sequence