Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20815

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20810 and BPHYT_RS20815 are separated by 18 nucleotidesBPHYT_RS20815 and BPHYT_RS20820 are separated by 7 nucleotides BPHYT_RS20810: BPHYT_RS20810 - ABC transporter permease, at 231,584 to 232,549 _RS20810 BPHYT_RS20815: BPHYT_RS20815 - ABC transporter ATP-binding protein, at 232,568 to 234,067 _RS20815 BPHYT_RS20820: BPHYT_RS20820 - ABC transporter permease, at 234,075 to 235,034 _RS20820 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2at 232.142 kb on - strand, within BPHYT_RS20810at 232.289 kb on + strand, within BPHYT_RS20810at 232.290 kb on - strand, within BPHYT_RS20810at 232.547 kb on + strandat 232.548 kb on - strandat 232.811 kb on + strand, within BPHYT_RS20815at 232.811 kb on + strand, within BPHYT_RS20815at 232.812 kb on - strand, within BPHYT_RS20815at 232.974 kb on + strand, within BPHYT_RS20815at 233.207 kb on + strand, within BPHYT_RS20815at 233.309 kb on + strand, within BPHYT_RS20815at 233.882 kb on + strand, within BPHYT_RS20815at 233.882 kb on + strand, within BPHYT_RS20815at 233.882 kb on + strand, within BPHYT_RS20815at 233.883 kb on - strand, within BPHYT_RS20815at 233.883 kb on - strand, within BPHYT_RS20815

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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232,142 - BPHYT_RS20810 0.58 -0.0
232,289 + BPHYT_RS20810 0.73 -0.2
232,290 - BPHYT_RS20810 0.73 -0.2
232,547 + -1.4
232,548 - +0.4
232,811 + BPHYT_RS20815 0.16 +1.2
232,811 + BPHYT_RS20815 0.16 +0.4
232,812 - BPHYT_RS20815 0.16 -1.2
232,974 + BPHYT_RS20815 0.27 -2.2
233,207 + BPHYT_RS20815 0.43 -0.5
233,309 + BPHYT_RS20815 0.49 +0.4
233,882 + BPHYT_RS20815 0.88 +0.3
233,882 + BPHYT_RS20815 0.88 +2.4
233,882 + BPHYT_RS20815 0.88 -0.4
233,883 - BPHYT_RS20815 0.88 +0.1
233,883 - BPHYT_RS20815 0.88 +0.1

Or see this region's nucleotide sequence