Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20520

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20515 and BPHYT_RS20520 are separated by 232 nucleotidesBPHYT_RS20520 and BPHYT_RS20525 are separated by 76 nucleotides BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776 _RS20515 BPHYT_RS20520: BPHYT_RS20520 - transcriptional regulator, at 166,009 to 166,908 _RS20520 BPHYT_RS20525: BPHYT_RS20525 - esterase, at 166,985 to 168,571 _RS20525 Position (kb) 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 165.067 kb on + strand, within BPHYT_RS20515at 165.128 kb on - strand, within BPHYT_RS20515at 165.322 kb on + strand, within BPHYT_RS20515at 165.712 kb on + strandat 165.832 kb on + strandat 165.914 kb on + strandat 165.914 kb on + strandat 165.914 kb on + strandat 165.914 kb on + strandat 165.914 kb on + strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.915 kb on - strandat 165.919 kb on + strandat 165.973 kb on + strandat 165.979 kb on + strandat 165.980 kb on - strandat 165.980 kb on - strandat 166.031 kb on - strandat 166.478 kb on - strand, within BPHYT_RS20520at 166.821 kb on + strandat 166.822 kb on - strandat 166.833 kb on + strandat 166.834 kb on - strandat 166.920 kb on + strandat 166.924 kb on + strandat 166.925 kb on - strandat 166.927 kb on - strandat 166.992 kb on + strandat 166.992 kb on + strandat 166.992 kb on + strandat 166.992 kb on + strandat 166.992 kb on + strandat 166.993 kb on - strandat 166.993 kb on - strandat 167.194 kb on - strand, within BPHYT_RS20525at 167.194 kb on - strand, within BPHYT_RS20525at 167.266 kb on + strand, within BPHYT_RS20525at 167.343 kb on - strand, within BPHYT_RS20525at 167.386 kb on + strand, within BPHYT_RS20525at 167.450 kb on + strand, within BPHYT_RS20525at 167.450 kb on + strand, within BPHYT_RS20525at 167.451 kb on - strand, within BPHYT_RS20525at 167.466 kb on - strand, within BPHYT_RS20525at 167.466 kb on - strand, within BPHYT_RS20525at 167.486 kb on + strand, within BPHYT_RS20525at 167.486 kb on + strand, within BPHYT_RS20525at 167.741 kb on + strand, within BPHYT_RS20525at 167.848 kb on + strand, within BPHYT_RS20525at 167.849 kb on - strand, within BPHYT_RS20525at 167.852 kb on + strand, within BPHYT_RS20525at 167.873 kb on + strand, within BPHYT_RS20525at 167.874 kb on - strand, within BPHYT_RS20525

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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165,067 + BPHYT_RS20515 0.18 -3.1
165,128 - BPHYT_RS20515 0.25 +0.5
165,322 + BPHYT_RS20515 0.47 +1.7
165,712 + +1.2
165,832 + -2.4
165,914 + -3.4
165,914 + -0.1
165,914 + -1.2
165,914 + -0.3
165,914 + +0.1
165,915 - -0.6
165,915 - -0.2
165,915 - -0.2
165,915 - +1.0
165,915 - +0.3
165,915 - -1.4
165,915 - +2.1
165,915 - +0.3
165,919 + -0.3
165,973 + -0.1
165,979 + +0.1
165,980 - -0.5
165,980 - -0.0
166,031 - -2.1
166,478 - BPHYT_RS20520 0.52 -3.7
166,821 + +2.3
166,822 - -0.1
166,833 + +0.3
166,834 - +0.8
166,920 + +0.7
166,924 + +0.2
166,925 - -3.1
166,927 - -1.0
166,992 + -0.8
166,992 + +0.6
166,992 + +0.4
166,992 + +0.5
166,992 + -0.2
166,993 - +0.4
166,993 - +0.3
167,194 - BPHYT_RS20525 0.13 -4.3
167,194 - BPHYT_RS20525 0.13 +1.9
167,266 + BPHYT_RS20525 0.18 -1.6
167,343 - BPHYT_RS20525 0.23 +0.0
167,386 + BPHYT_RS20525 0.25 -1.8
167,450 + BPHYT_RS20525 0.29 -3.0
167,450 + BPHYT_RS20525 0.29 +0.7
167,451 - BPHYT_RS20525 0.29 +2.3
167,466 - BPHYT_RS20525 0.30 -0.4
167,466 - BPHYT_RS20525 0.30 -3.1
167,486 + BPHYT_RS20525 0.32 -0.2
167,486 + BPHYT_RS20525 0.32 -1.6
167,741 + BPHYT_RS20525 0.48 +1.9
167,848 + BPHYT_RS20525 0.54 -0.3
167,849 - BPHYT_RS20525 0.54 +0.1
167,852 + BPHYT_RS20525 0.55 -0.0
167,873 + BPHYT_RS20525 0.56 -0.4
167,874 - BPHYT_RS20525 0.56 -1.1

Or see this region's nucleotide sequence