Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20165 and BPHYT_RS20170 are separated by 168 nucleotides BPHYT_RS20170 and BPHYT_RS20175 are separated by 56 nucleotides BPHYT_RS20175 and BPHYT_RS20180 overlap by 4 nucleotides
BPHYT_RS20165: BPHYT_RS20165 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 66,730 to 67,968
_RS20165
BPHYT_RS20170: BPHYT_RS20170 - sugar transporter, at 68,137 to 70,359
_RS20170
BPHYT_RS20175: BPHYT_RS20175 - protein-tyrosine-phosphatase, at 70,416 to 70,868
_RS20175
BPHYT_RS20180: BPHYT_RS20180 - sugar ABC transporter substrate-binding protein, at 70,865 to 71,917
_RS20180
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -1
0
1
2 at 67.514 kb on - strand, within BPHYT_RS20165 at 67.676 kb on - strand, within BPHYT_RS20165 at 67.728 kb on + strand, within BPHYT_RS20165 at 68.162 kb on + strand at 68.450 kb on - strand, within BPHYT_RS20170 at 68.727 kb on + strand, within BPHYT_RS20170 at 69.303 kb on - strand, within BPHYT_RS20170 at 69.871 kb on - strand, within BPHYT_RS20170 at 70.860 kb on - strand at 70.889 kb on + strand at 71.069 kb on + strand, within BPHYT_RS20180 at 71.182 kb on + strand, within BPHYT_RS20180 at 71.251 kb on + strand, within BPHYT_RS20180
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 67,514 - BPHYT_RS20165 0.63 +0.2 67,676 - BPHYT_RS20165 0.76 +1.3 67,728 + BPHYT_RS20165 0.81 -1.6 68,162 + -0.0 68,450 - BPHYT_RS20170 0.14 +0.9 68,727 + BPHYT_RS20170 0.27 +2.0 69,303 - BPHYT_RS20170 0.52 -1.1 69,871 - BPHYT_RS20170 0.78 +0.4 70,860 - +0.3 70,889 + +1.7 71,069 + BPHYT_RS20180 0.19 +1.5 71,182 + BPHYT_RS20180 0.30 -1.5 71,251 + BPHYT_RS20180 0.37 +0.8
Or see this region's nucleotide sequence