Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19930

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19925 and BPHYT_RS19930 overlap by 1 nucleotidesBPHYT_RS19930 and BPHYT_RS19935 are separated by 24 nucleotidesBPHYT_RS19935 and BPHYT_RS19940 are separated by 5 nucleotides BPHYT_RS19925: BPHYT_RS19925 - peptidase C39, at 14,550 to 17,606 _RS19925 BPHYT_RS19930: BPHYT_RS19930 - transcriptional regulator, at 17,606 to 18,961 _RS19930 BPHYT_RS19935: BPHYT_RS19935 - protein serine/threonine phosphatase, at 18,986 to 19,756 _RS19935 BPHYT_RS19940: BPHYT_RS19940 - hypothetical protein, at 19,762 to 20,049 _RS19940 Position (kb) 17 18 19Strain fitness (log2 ratio) -2 -1 0 1at 17.122 kb on - strand, within BPHYT_RS19925at 17.423 kb on + strandat 18.533 kb on + strand, within BPHYT_RS19930at 18.533 kb on + strand, within BPHYT_RS19930at 18.706 kb on - strand, within BPHYT_RS19930at 19.413 kb on + strand, within BPHYT_RS19935at 19.469 kb on + strand, within BPHYT_RS19935at 19.770 kb on + strandat 19.831 kb on + strand, within BPHYT_RS19940at 19.832 kb on - strand, within BPHYT_RS19940at 19.871 kb on + strand, within BPHYT_RS19940at 19.934 kb on + strand, within BPHYT_RS19940

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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17,122 - BPHYT_RS19925 0.84 +1.0
17,423 + -0.8
18,533 + BPHYT_RS19930 0.68 -2.7
18,533 + BPHYT_RS19930 0.68 +0.4
18,706 - BPHYT_RS19930 0.81 +0.5
19,413 + BPHYT_RS19935 0.55 -1.5
19,469 + BPHYT_RS19935 0.63 -0.2
19,770 + +0.1
19,831 + BPHYT_RS19940 0.24 -0.5
19,832 - BPHYT_RS19940 0.24 +0.5
19,871 + BPHYT_RS19940 0.38 -2.7
19,934 + BPHYT_RS19940 0.60 -0.0

Or see this region's nucleotide sequence