Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17845

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,025,998	-		BPHYT_RS17840	0.38	+0.9
4,026,030	+		BPHYT_RS17840	0.41	-0.1
4,026,030	+		BPHYT_RS17840	0.41	-0.0
4,026,030	+		BPHYT_RS17840	0.41	+2.1
4,026,031	-		BPHYT_RS17840	0.41	+0.1
4,026,031	-		BPHYT_RS17840	0.41	+1.1
4,026,031	-		BPHYT_RS17840	0.41	-2.0
4,026,084	+		BPHYT_RS17840	0.45	-0.0
4,026,084	+		BPHYT_RS17840	0.45	-0.7
4,026,084	+		BPHYT_RS17840	0.45	-0.1
4,026,085	-		BPHYT_RS17840	0.45	+0.5
4,026,085	-		BPHYT_RS17840	0.45	+1.1
4,026,085	-		BPHYT_RS17840	0.45	+1.7
4,026,273	+		BPHYT_RS17840	0.60	-0.9
4,026,354	+				+1.6
4,026,356	+		BPHYT_RS17840	0.67	-1.0
4,026,356	+		BPHYT_RS17840	0.67	-3.5
4,026,444	+		BPHYT_RS17840	0.74	-1.1
4,026,444	+		BPHYT_RS17840	0.74	-3.1
4,026,445	-		BPHYT_RS17840	0.74	-4.3
4,026,537	+		BPHYT_RS17840	0.81	+0.8
4,026,538	-		BPHYT_RS17840	0.81	-4.5
4,026,538	-		BPHYT_RS17840	0.81	+0.1
4,026,639	-		BPHYT_RS17840	0.89	+0.4
4,026,786	-				+0.4
4,026,945	-		BPHYT_RS17845	0.12	-0.8
4,026,992	+		BPHYT_RS17845	0.16	-0.4
4,026,992	+		BPHYT_RS17845	0.16	+0.9
4,026,993	-		BPHYT_RS17845	0.16	+0.1
4,026,993	-		BPHYT_RS17845	0.16	-1.3
4,027,130	+		BPHYT_RS17845	0.26	+0.7
4,027,130	+		BPHYT_RS17845	0.26	+0.7
4,027,130	+		BPHYT_RS17845	0.26	-1.5
4,027,134	-		BPHYT_RS17845	0.27	-0.1
4,027,134	-		BPHYT_RS17845	0.27	-0.8
4,027,134	-		BPHYT_RS17845	0.27	-0.4
4,027,182	-		BPHYT_RS17845	0.30	-0.3
4,027,182	-		BPHYT_RS17845	0.30	+0.6
4,027,200	-		BPHYT_RS17845	0.32	-0.5
4,027,223	+		BPHYT_RS17845	0.34	+0.3
4,027,417	+		BPHYT_RS17845	0.49	-1.2
4,027,418	-		BPHYT_RS17845	0.49	+1.1
4,027,418	-		BPHYT_RS17845	0.49	-1.6
4,027,419	+		BPHYT_RS17845	0.49	-2.0
4,027,420	-		BPHYT_RS17845	0.49	+0.1
4,027,504	+		BPHYT_RS17845	0.56	-0.2
4,027,536	-		BPHYT_RS17845	0.58	-3.4
4,027,536	-		BPHYT_RS17845	0.58	-1.2
4,027,709	-		BPHYT_RS17845	0.72	+0.2
4,028,090	-				+1.8
4,028,090	-				+1.4
4,028,376	-				-0.8