Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16975

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,848,393	-				+0.8
3,848,419	-				+0.5
3,848,419	-				+1.2
3,848,419	-				+0.9
3,848,419	-				-0.1
3,848,419	-				+0.8
3,848,521	+				+2.7
3,848,521	+				+0.9
3,848,522	-				-0.6
3,848,549	-		BPHYT_RS16970	0.12	+0.3
3,848,553	-		BPHYT_RS16970	0.13	+0.6
3,848,604	-		BPHYT_RS16970	0.20	+0.2
3,848,621	-		BPHYT_RS16970	0.22	-0.7
3,848,621	-		BPHYT_RS16970	0.22	+1.2
3,848,626	+		BPHYT_RS16970	0.23	+0.2
3,848,627	-		BPHYT_RS16970	0.23	-1.4
3,848,732	+		BPHYT_RS16970	0.38	-0.0
3,848,732	+		BPHYT_RS16970	0.38	-1.5
3,848,732	+		BPHYT_RS16970	0.38	+0.6
3,848,733	-		BPHYT_RS16970	0.38	+0.8
3,848,733	-		BPHYT_RS16970	0.38	-0.1
3,848,762	-		BPHYT_RS16970	0.42	+0.1
3,848,807	+		BPHYT_RS16970	0.48	+0.5
3,848,808	-		BPHYT_RS16970	0.48	+0.7
3,848,847	-		BPHYT_RS16970	0.54	-1.9
3,848,895	-		BPHYT_RS16970	0.60	+0.0
3,848,898	-		BPHYT_RS16970	0.61	-0.8
3,848,924	+		BPHYT_RS16970	0.64	+0.4
3,848,924	+		BPHYT_RS16970	0.64	-2.7
3,848,925	-		BPHYT_RS16970	0.64	-4.3
3,848,925	-		BPHYT_RS16970	0.64	-0.0
3,848,959	+		BPHYT_RS16970	0.69	+0.4
3,848,959	+		BPHYT_RS16970	0.69	+0.3
3,848,960	-		BPHYT_RS16970	0.69	+0.5
3,849,038	+		BPHYT_RS16970	0.80	+0.2
3,849,038	+		BPHYT_RS16970	0.80	+0.4
3,849,039	-		BPHYT_RS16970	0.80	-0.2
3,849,039	-		BPHYT_RS16970	0.80	+0.1
3,849,055	+		BPHYT_RS16970	0.82	-0.1
3,849,056	-		BPHYT_RS16970	0.82	-0.5
3,849,083	-		BPHYT_RS16970	0.86	+0.9
3,849,130	+				+0.9
3,849,220	+				-0.9
3,849,220	+				-1.5
3,849,221	-				-0.3
3,849,427	+		BPHYT_RS16975	0.23	-2.9
3,849,428	-		BPHYT_RS16975	0.23	-2.7
3,849,428	-		BPHYT_RS16975	0.23	+1.0
3,849,645	-		BPHYT_RS16975	0.48	-4.4
3,849,795	-		BPHYT_RS16975	0.65	-1.3
3,849,818	+		BPHYT_RS16975	0.68	-0.7
3,849,818	+		BPHYT_RS16975	0.68	+1.4
3,849,818	+		BPHYT_RS16975	0.68	-2.8
3,849,819	-		BPHYT_RS16975	0.68	-1.2
3,849,819	-		BPHYT_RS16975	0.68	-1.6