Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16735

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,787,581	+				+0.2
3,787,582	-				-0.2
3,787,652	-				-0.6
3,787,714	+				-2.3
3,787,715	-				+2.6
3,787,715	-				-0.7
3,788,355	-				-2.0
3,788,355	-				-0.8
3,788,382	-				-0.2
3,788,515	+				-2.3
3,788,515	+				-4.4
3,789,135	-		BPHYT_RS16735	0.40	-2.2
3,789,267	-		BPHYT_RS16735	0.47	-5.1
3,789,452	+		BPHYT_RS16735	0.56	-1.7
3,789,466	+		BPHYT_RS16735	0.57	-4.5
3,789,466	+		BPHYT_RS16735	0.57	-3.9
3,789,467	-		BPHYT_RS16735	0.57	-4.4
3,789,525	+		BPHYT_RS16735	0.60	-1.9
3,789,605	+		BPHYT_RS16735	0.64	-1.0
3,789,605	+		BPHYT_RS16735	0.64	-1.3
3,789,633	-		BPHYT_RS16735	0.66	-3.8
3,789,633	-		BPHYT_RS16735	0.66	-4.4
3,790,056	-		BPHYT_RS16735	0.88	-1.4
3,790,208	+				-2.7
3,790,209	-				-2.0
3,790,209	-				+2.2
3,790,541	-				-0.2
3,790,542	+				+0.7
3,790,543	-				-0.8
3,790,544	+				+0.4
3,790,565	+				+1.6
3,790,566	-				-2.6
3,790,647	+				-2.6
3,790,647	+				-0.8
3,790,647	+				-2.2
3,790,648	-				+0.8
3,790,780	+		BPHYT_RS16740	0.24	+1.2
3,790,780	+		BPHYT_RS16740	0.24	-0.1
3,790,822	-		BPHYT_RS16740	0.28	-0.0
3,790,951	+		BPHYT_RS16740	0.44	-0.2
3,790,977	+		BPHYT_RS16740	0.47	-0.3
3,790,977	+		BPHYT_RS16740	0.47	+0.0
3,790,978	-		BPHYT_RS16740	0.47	-1.2
3,791,069	+		BPHYT_RS16740	0.58	-0.8
3,791,069	+		BPHYT_RS16740	0.58	-0.9
3,791,073	+		BPHYT_RS16740	0.58	+0.6
3,791,074	-		BPHYT_RS16740	0.58	-1.2
3,791,074	-		BPHYT_RS16740	0.58	-0.1