Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15580

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,534,143	+		BPHYT_RS15575	0.38	+3.2
3,534,197	+		BPHYT_RS15575	0.43	+0.0
3,534,289	+		BPHYT_RS15575	0.52	-0.2
3,534,491	+		BPHYT_RS15575	0.72	-1.0
3,534,491	+		BPHYT_RS15575	0.72	-0.4
3,534,492	-		BPHYT_RS15575	0.72	+0.1
3,534,644	+		BPHYT_RS15575	0.87	+0.2
3,534,653	+		BPHYT_RS15575	0.88	+0.2
3,534,653	+		BPHYT_RS15575	0.88	-0.3
3,534,653	+		BPHYT_RS15575	0.88	-1.8
3,534,654	-		BPHYT_RS15575	0.88	+0.1
3,534,734	+				-0.3
3,534,735	-				+0.2
3,534,735	-				+1.5
3,534,824	-				-0.1
3,534,828	-				-1.0
3,535,178	+				-0.1
3,535,367	+		BPHYT_RS15580	0.19	-0.1
3,535,368	-		BPHYT_RS15580	0.19	+0.7
3,535,411	+		BPHYT_RS15580	0.23	+0.7
3,535,411	+		BPHYT_RS15580	0.23	+0.8
3,535,411	+		BPHYT_RS15580	0.23	+1.2
3,535,412	-		BPHYT_RS15580	0.23	+1.0
3,535,601	+		BPHYT_RS15580	0.39	+0.2
3,535,601	+		BPHYT_RS15580	0.39	+1.3
3,535,602	-		BPHYT_RS15580	0.39	+1.8
3,535,970	+		BPHYT_RS15580	0.70	+0.5
3,535,970	+		BPHYT_RS15580	0.70	-0.2
3,536,324	+				-0.7
3,536,325	-				+0.8
3,536,345	-				+0.2
3,536,586	-		BPHYT_RS15585	0.51	+2.1
3,536,662	-		BPHYT_RS15585	0.67	-1.0
3,536,662	-		BPHYT_RS15585	0.67	-1.0
3,536,900	-				+0.1
3,536,900	-				-0.6
3,536,911	+				+0.4
3,536,911	+				-0.1
3,536,990	-		BPHYT_RS15590	0.13	+0.4
3,537,298	+		BPHYT_RS15590	0.56	+0.1
3,537,298	+		BPHYT_RS15590	0.56	+1.9