Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15105

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,437,759	+		BPHYT_RS15100	0.45	+0.4
3,437,759	+		BPHYT_RS15100	0.45	-0.1
3,437,759	+		BPHYT_RS15100	0.45	+1.2
3,437,760	-		BPHYT_RS15100	0.45	+0.3
3,437,760	-		BPHYT_RS15100	0.45	+1.5
3,437,760	-		BPHYT_RS15100	0.45	-0.6
3,437,942	+		BPHYT_RS15100	0.59	-0.5
3,437,943	-		BPHYT_RS15100	0.59	+0.4
3,437,943	-		BPHYT_RS15100	0.59	-1.3
3,438,231	-		BPHYT_RS15100	0.80	-0.1
3,438,231	-		BPHYT_RS15100	0.80	+0.1
3,438,425	+				+1.7
3,438,426	-				-0.5
3,438,522	+				-1.6
3,438,522	+				-1.1
3,438,522	+				+1.4
3,438,534	+				+0.9
3,438,573	+				+1.2
3,438,653	+				-0.3
3,438,653	+				+0.5
3,438,654	-				+0.1
3,438,654	-				-0.3
3,438,654	-				+1.9
3,438,678	-				+1.2
3,438,678	-				+1.4
3,438,790	-				+1.2
3,438,996	-		BPHYT_RS15105	0.32	+3.4
3,439,492	+		BPHYT_RS15105	0.72	+0.2
3,439,493	-		BPHYT_RS15105	0.72	+1.9
3,439,523	+		BPHYT_RS15105	0.75	-1.4
3,439,611	-		BPHYT_RS15105	0.82	+0.2
3,439,662	-		BPHYT_RS15105	0.86	-0.6
3,439,833	+				-0.7
3,439,833	+				+0.2
3,439,834	-				-0.7
3,439,834	-				+0.3
3,439,890	-				-0.5
3,439,890	-				-0.2
3,439,890	-				+0.5
3,439,890	-				-0.0
3,440,044	+				-1.5
3,440,044	+				-0.4
3,440,048	+				-4.2
3,440,048	+				-0.2
3,440,048	+				+1.0
3,440,048	+				+0.9
3,440,049	-				+0.1
3,440,049	-				-1.2
3,440,049	-				+0.7
3,440,049	-				-0.7
3,440,049	-				+1.3
3,440,050	+		BPHYT_RS15110	0.10	-0.7
3,440,050	+		BPHYT_RS15110	0.10	-2.8
3,440,051	-		BPHYT_RS15110	0.10	+0.4
3,440,456	+		BPHYT_RS15110	0.65	-0.3
3,440,457	-		BPHYT_RS15110	0.65	-0.2
3,440,585	+		BPHYT_RS15110	0.83	+0.7
3,440,585	+		BPHYT_RS15110	0.83	+0.2
3,440,757	-				+0.6