Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15025

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,416,077	+		BPHYT_RS15020	0.58	+2.5
3,416,077	+		BPHYT_RS15020	0.58	+0.2
3,416,078	-		BPHYT_RS15020	0.58	+0.8
3,416,078	-		BPHYT_RS15020	0.58	-1.7
3,416,114	-		BPHYT_RS15020	0.60	-0.2
3,416,342	+		BPHYT_RS15020	0.72	-1.0
3,416,343	-		BPHYT_RS15020	0.72	+0.4
3,416,363	+		BPHYT_RS15020	0.73	-1.2
3,416,669	-		BPHYT_RS15020	0.90	-0.1
3,416,669	-		BPHYT_RS15020	0.90	+0.7
3,416,940	-				-2.7
3,417,011	+				-2.0
3,417,150	-		BPHYT_RS15025	0.14	-1.5
3,417,223	-		BPHYT_RS15025	0.19	-0.1
3,417,224	+		BPHYT_RS15025	0.19	-0.5
3,417,224	+		BPHYT_RS15025	0.19	-0.0
3,417,225	-		BPHYT_RS15025	0.20	-1.1
3,417,441	+		BPHYT_RS15025	0.36	+0.2
3,417,503	+		BPHYT_RS15025	0.41	-1.2
3,417,503	+		BPHYT_RS15025	0.41	-0.9
3,417,503	+		BPHYT_RS15025	0.41	-3.1
3,417,504	-		BPHYT_RS15025	0.41	-1.6
3,417,846	-		BPHYT_RS15025	0.67	-0.4
3,417,941	+		BPHYT_RS15025	0.75	-0.6
3,418,158	-				-1.0
3,418,158	-				-0.2
3,418,166	+				-0.2
3,418,167	-				+0.3
3,418,251	+				-1.0
3,418,251	+				+0.1
3,418,252	-				-2.5
3,418,252	-				-2.0
3,418,267	-				-1.0
3,418,465	+				+0.3
3,418,465	+				+0.2
3,418,465	+				-0.3
3,418,465	+				+1.6
3,418,500	+				-3.8
3,418,501	-				-2.2
3,418,501	-				-1.2
3,418,511	+				+0.3
3,418,511	+				+0.8
3,418,515	+				-0.4
3,418,516	-				-1.2
3,418,565	+				+2.1
3,418,668	+		BPHYT_RS15030	0.18	-0.7
3,418,728	+		BPHYT_RS15030	0.29	-0.3
3,418,729	-		BPHYT_RS15030	0.29	-1.9
3,418,774	+		BPHYT_RS15030	0.38	+0.2
3,418,774	+		BPHYT_RS15030	0.38	+2.2
3,418,882	-		BPHYT_RS15030	0.58	+0.1
3,418,960	-		BPHYT_RS15030	0.73	-2.4
3,418,965	+		BPHYT_RS15030	0.74	+1.1
3,418,966	-		BPHYT_RS15030	0.74	-2.9
3,418,966	-		BPHYT_RS15030	0.74	-1.3
3,418,966	-		BPHYT_RS15030	0.74	+0.2
3,419,001	+		BPHYT_RS15030	0.81	+1.0
3,419,064	-				+0.4
3,419,064	-				+0.2
3,419,064	-				+2.2
3,419,082	+				-3.2
3,419,083	-				+0.8
3,419,204	-				+1.3
3,419,253	+				+0.0
3,419,254	-				+2.2
3,419,254	-				-0.4