Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14915

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,391,231	-		BPHYT_RS14910	0.31	-3.0
3,391,490	-		BPHYT_RS14910	0.55	-3.0
3,391,490	-		BPHYT_RS14910	0.55	-6.4
3,391,648	-		BPHYT_RS14910	0.69	-6.1
3,391,672	-		BPHYT_RS14910	0.72	-1.4
3,391,672	-		BPHYT_RS14910	0.72	-3.4
3,391,672	-		BPHYT_RS14910	0.72	-3.9
3,391,760	-		BPHYT_RS14910	0.80	-4.2
3,391,760	-		BPHYT_RS14910	0.80	-2.8
3,392,043	-				+1.3
3,392,043	-				-0.6
3,392,120	-				-1.3
3,392,120	-				-3.0
3,392,120	-				-6.0
3,392,122	-				-1.8
3,392,122	-				+1.8
3,392,281	-		BPHYT_RS14915	0.22	-2.4
3,392,308	-		BPHYT_RS14915	0.24	-2.5
3,392,308	-		BPHYT_RS14915	0.24	-4.1
3,392,398	-		BPHYT_RS14915	0.32	-6.0
3,392,398	-		BPHYT_RS14915	0.32	-2.7
3,392,407	-		BPHYT_RS14915	0.33	-4.9
3,392,407	-		BPHYT_RS14915	0.33	-3.5
3,392,565	-		BPHYT_RS14915	0.48	-5.1
3,392,572	-		BPHYT_RS14915	0.48	-3.1
3,393,366	+		BPHYT_RS14920	0.80	-1.4
3,393,366	+		BPHYT_RS14920	0.80	-3.3
3,393,367	-		BPHYT_RS14920	0.80	-0.4
3,393,423	+				-0.2
3,393,430	-				+1.0
3,393,430	-				+0.6
3,394,078	-				+1.5
3,394,082	-				-1.3
3,394,082	-				-2.4
3,394,082	-				+0.2
3,394,123	-				+1.5
3,394,123	-				+0.6