Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14910

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,389,917	-		BPHYT_RS14905	0.19	+2.0
3,390,199	-		BPHYT_RS14905	0.44	-1.7
3,390,199	-		BPHYT_RS14905	0.44	+0.3
3,390,220	-		BPHYT_RS14905	0.46	-0.9
3,390,229	-		BPHYT_RS14905	0.47	-1.2
3,390,394	-		BPHYT_RS14905	0.62	+3.8
3,390,394	-		BPHYT_RS14905	0.62	+0.3
3,390,451	-		BPHYT_RS14905	0.67	+1.1
3,390,451	-		BPHYT_RS14905	0.67	+0.1
3,390,475	-		BPHYT_RS14905	0.69	+0.5
3,390,574	-		BPHYT_RS14905	0.78	-1.2
3,390,630	-		BPHYT_RS14905	0.83	+0.5
3,390,630	-		BPHYT_RS14905	0.83	+1.8
3,390,772	-				-0.3
3,390,772	-				-2.4
3,390,772	-				+2.2
3,390,793	-				+0.0
3,390,836	-				-1.2
3,390,842	-				+0.2
3,391,009	-		BPHYT_RS14910	0.10	-4.2
3,391,014	+		BPHYT_RS14910	0.11	-0.5
3,391,015	-		BPHYT_RS14910	0.11	-3.5
3,391,015	-		BPHYT_RS14910	0.11	-3.9
3,391,015	-		BPHYT_RS14910	0.11	-2.0
3,391,015	-		BPHYT_RS14910	0.11	-2.9
3,391,015	-		BPHYT_RS14910	0.11	-1.6
3,391,015	-		BPHYT_RS14910	0.11	-3.1
3,391,018	-		BPHYT_RS14910	0.11	-3.5
3,391,231	-		BPHYT_RS14910	0.31	-3.0
3,391,490	-		BPHYT_RS14910	0.55	-3.0
3,391,490	-		BPHYT_RS14910	0.55	-6.4
3,391,648	-		BPHYT_RS14910	0.69	-6.1
3,391,672	-		BPHYT_RS14910	0.72	-1.4
3,391,672	-		BPHYT_RS14910	0.72	-3.4
3,391,672	-		BPHYT_RS14910	0.72	-3.9
3,391,760	-		BPHYT_RS14910	0.80	-4.2
3,391,760	-		BPHYT_RS14910	0.80	-2.8
3,392,043	-				+1.3
3,392,043	-				-0.6
3,392,120	-				-1.3
3,392,120	-				-3.0
3,392,120	-				-6.0
3,392,122	-				-1.8
3,392,122	-				+1.8
3,392,281	-		BPHYT_RS14915	0.22	-2.4
3,392,308	-		BPHYT_RS14915	0.24	-2.5
3,392,308	-		BPHYT_RS14915	0.24	-4.1
3,392,398	-		BPHYT_RS14915	0.32	-6.0
3,392,398	-		BPHYT_RS14915	0.32	-2.7
3,392,407	-		BPHYT_RS14915	0.33	-4.9
3,392,407	-		BPHYT_RS14915	0.33	-3.5
3,392,565	-		BPHYT_RS14915	0.48	-5.1
3,392,572	-		BPHYT_RS14915	0.48	-3.1