Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14195

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,242,379	+		BPHYT_RS14190	0.82	+2.5
3,242,382	-		BPHYT_RS14190	0.83	-2.8
3,242,618	+		BPHYT_RS14190	0.90	-1.0
3,242,619	-		BPHYT_RS14190	0.90	-1.1
3,242,757	-				+0.5
3,242,825	+				-1.5
3,242,826	-				-3.5
3,242,826	-				-1.4
3,242,966	+				-1.0
3,242,966	+				-2.9
3,242,967	-				+0.5
3,242,967	-				-1.1
3,242,967	-				-0.4
3,242,967	-				+0.5
3,243,003	+				-0.3
3,243,003	+				-3.0
3,243,004	-				-0.2
3,243,235	-				-2.5
3,243,565	+		BPHYT_RS14195	0.34	-0.5
3,243,732	+		BPHYT_RS14195	0.49	+4.8
3,243,816	+		BPHYT_RS14195	0.56	-1.4
3,244,100	-		BPHYT_RS14195	0.81	-1.6
3,244,561	-				-3.1
3,244,801	+				-0.5
3,244,802	-				-1.0
3,244,815	-				+0.9
3,244,815	-				+0.3
3,244,880	-				+1.3
3,245,191	+		BPHYT_RS14200	0.30	+1.0
3,245,191	+				+0.5
3,245,192	-		BPHYT_RS14200	0.30	-1.0
3,245,192	-		BPHYT_RS14200	0.30	+0.7
3,245,222	-		BPHYT_RS14200	0.33	+0.2
3,245,232	-		BPHYT_RS14200	0.33	+0.4
3,245,232	-		BPHYT_RS14200	0.33	-1.3