Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13995

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,196,732	+		BPHYT_RS13985	0.89	+1.8
3,196,733	-		BPHYT_RS13985	0.89	+0.0
3,197,173	-		BPHYT_RS13990	0.35	-1.8
3,197,526	+				+0.1
3,197,527	-				+0.2
3,197,568	+				-1.3
3,197,568	+				-0.6
3,197,738	+				+1.1
3,197,787	-				-0.5
3,197,798	+				-0.7
3,197,798	+				-0.4
3,198,149	+		BPHYT_RS13995	0.30	-0.4
3,198,149	+		BPHYT_RS13995	0.30	-0.4
3,198,150	-		BPHYT_RS13995	0.30	-0.7
3,198,336	-		BPHYT_RS13995	0.41	+0.1
3,198,336	-		BPHYT_RS13995	0.41	-0.8
3,198,336	-		BPHYT_RS13995	0.41	-1.1
3,198,356	+		BPHYT_RS13995	0.42	-1.6
3,198,411	-		BPHYT_RS13995	0.45	+0.8
3,198,411	-		BPHYT_RS13995	0.45	-0.8
3,198,572	+		BPHYT_RS13995	0.54	-0.7
3,198,573	-		BPHYT_RS13995	0.54	-0.9
3,198,573	-		BPHYT_RS13995	0.54	+0.7
3,198,611	+		BPHYT_RS13995	0.56	-0.7
3,198,612	-		BPHYT_RS13995	0.56	+0.5
3,198,650	+		BPHYT_RS13995	0.59	-1.2
3,198,651	-		BPHYT_RS13995	0.59	-0.1
3,198,713	+		BPHYT_RS13995	0.62	-1.5
3,198,743	+		BPHYT_RS13995	0.64	-0.8
3,198,986	+		BPHYT_RS13995	0.78	+0.2
3,198,986	+		BPHYT_RS13995	0.78	-0.6
3,198,986	+		BPHYT_RS13995	0.78	-0.6
3,198,986	+		BPHYT_RS13995	0.78	+0.1
3,198,986	+		BPHYT_RS13995	0.78	+0.4
3,198,987	-		BPHYT_RS13995	0.78	-1.2
3,198,987	-		BPHYT_RS13995	0.78	-1.2
3,198,987	-		BPHYT_RS13995	0.78	-2.1
3,199,037	+		BPHYT_RS13995	0.81	-0.5
3,199,543	-				+3.5
3,199,543	-				-0.3
3,199,658	+				-0.1
3,199,659	-				+0.4
3,199,750	-				-0.8
3,199,750	-				-0.5
3,199,782	+				+0.3
3,199,782	+				+0.3
3,199,782	+				+1.2
3,199,782	+				-0.0
3,199,896	+				-0.7
3,199,896	+				-1.8