Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13985

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,195,438	+				+0.2
3,195,438	+				-1.9
3,195,438	+				+0.8
3,195,439	-				+0.7
3,195,471	-				-1.7
3,195,471	-				-2.4
3,195,511	-				-0.2
3,195,552	+				+0.6
3,195,552	+				+0.1
3,195,562	+				-0.5
3,195,563	-				+0.5
3,195,596	+				-2.5
3,195,596	+				-2.7
3,195,596	+				-0.1
3,195,596	+				+1.7
3,195,597	-				-0.5
3,195,597	-				+0.7
3,195,644	-				+0.6
3,195,644	-				-3.6
3,195,687	+				+0.1
3,195,836	+		BPHYT_RS13985	0.16	+0.1
3,195,837	-		BPHYT_RS13985	0.16	-2.1
3,195,837	-		BPHYT_RS13985	0.16	-3.0
3,195,837	-		BPHYT_RS13985	0.16	+0.8
3,195,839	+		BPHYT_RS13985	0.16	+1.0
3,195,839	+		BPHYT_RS13985	0.16	+0.8
3,195,840	-		BPHYT_RS13985	0.16	-0.5
3,195,951	-		BPHYT_RS13985	0.25	-1.0
3,196,022	+		BPHYT_RS13985	0.31	-0.5
3,196,196	+		BPHYT_RS13985	0.45	-0.4
3,196,196	+		BPHYT_RS13985	0.45	-1.2
3,196,196	+		BPHYT_RS13985	0.45	+1.4
3,196,197	-		BPHYT_RS13985	0.45	+1.0
3,196,197	-		BPHYT_RS13985	0.45	+0.9
3,196,197	-		BPHYT_RS13985	0.45	+1.3
3,196,197	-		BPHYT_RS13985	0.45	-0.1
3,196,256	+		BPHYT_RS13985	0.50	-0.1
3,196,376	+		BPHYT_RS13985	0.60	+0.3
3,196,473	+		BPHYT_RS13985	0.68	-0.7
3,196,474	-		BPHYT_RS13985	0.68	+1.0
3,196,732	+		BPHYT_RS13985	0.89	+1.8
3,196,733	-		BPHYT_RS13985	0.89	+0.0
3,197,173	-		BPHYT_RS13990	0.35	-1.8
3,197,526	+				+0.1
3,197,527	-				+0.2
3,197,568	+				-1.3
3,197,568	+				-0.6
3,197,738	+				+1.1
3,197,787	-				-0.5
3,197,798	+				-0.7
3,197,798	+				-0.4