Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13775

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,138,534	-		BPHYT_RS13770	0.64	+0.5
3,138,535	+		BPHYT_RS13770	0.64	-0.9
3,138,536	-		BPHYT_RS13770	0.64	+0.1
3,138,536	-		BPHYT_RS13770	0.64	+0.6
3,138,650	+		BPHYT_RS13770	0.70	-1.5
3,138,693	-		BPHYT_RS13770	0.72	-0.9
3,139,177	+				+0.2
3,139,304	-				+1.0
3,139,304	-				+0.8
3,139,305	-				+0.3
3,139,475	+		BPHYT_RS13775	0.13	+0.6
3,139,475	+		BPHYT_RS13775	0.13	+0.0
3,139,476	-		BPHYT_RS13775	0.13	-0.3
3,139,476	-		BPHYT_RS13775	0.13	-3.1
3,139,557	+		BPHYT_RS13775	0.16	+0.4
3,139,595	-		BPHYT_RS13775	0.18	+0.3
3,139,615	+		BPHYT_RS13775	0.19	+0.9
3,139,617	+		BPHYT_RS13775	0.19	-0.4
3,139,618	-		BPHYT_RS13775	0.19	+0.1
3,139,807	+		BPHYT_RS13775	0.28	+0.6
3,139,808	-		BPHYT_RS13775	0.28	-1.7
3,139,808	-		BPHYT_RS13775	0.28	-0.9
3,140,173	+		BPHYT_RS13775	0.44	+0.4
3,140,174	-		BPHYT_RS13775	0.44	+1.0
3,140,174	-		BPHYT_RS13775	0.44	-0.0
3,140,764	+		BPHYT_RS13775	0.71	+0.1
3,141,519	-		BPHYT_RS13780	0.57	-2.3
3,141,705	+				+1.1
3,141,706	-		BPHYT_RS13785	0.10	+3.0
3,141,706	-				+0.5
3,141,833	-		BPHYT_RS13785	0.24	+0.7
3,141,859	-		BPHYT_RS13785	0.27	+1.0
3,141,998	+		BPHYT_RS13785	0.43	+0.3
3,142,101	+		BPHYT_RS13785	0.55	+0.2
3,142,102	-		BPHYT_RS13785	0.55	+2.3
3,142,192	-		BPHYT_RS13785	0.65	+1.7
3,142,364	+		BPHYT_RS13785	0.85	-0.3