Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13220

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,014,919	+				-1.0
3,015,395	+				+0.3
3,015,428	+				-0.9
3,015,428	+				-0.6
3,015,428	+				+0.7
3,015,429	-				+0.1
3,015,494	+				+0.8
3,015,495	-				-0.3
3,015,646	-				-3.8
3,015,773	+				-0.1
3,015,773	+				-1.8
3,015,774	-				-3.5
3,015,774	-				-2.0
3,015,790	+				+0.5
3,015,791	-				-2.8
3,015,880	-				-3.7
3,015,978	+				-3.6
3,016,839	+		BPHYT_RS13220	0.54	-2.3
3,016,840	-		BPHYT_RS13220	0.54	-4.7
3,016,840	-		BPHYT_RS13220	0.54	-2.0
3,016,840	-		BPHYT_RS13220	0.54	-3.2
3,016,840	-		BPHYT_RS13220	0.54	-6.3
3,016,977	+		BPHYT_RS13220	0.61	-2.9
3,017,026	-		BPHYT_RS13220	0.64	-5.2
3,017,305	-		BPHYT_RS13220	0.78	-2.4
3,017,712	+				+0.4
3,017,757	-				+0.9
3,017,824	+				-2.7
3,017,825	-				-0.5
3,017,912	-				-0.1
3,017,952	-				-0.1
3,017,952	-				+0.6
3,017,963	+				-1.6
3,017,963	+				-0.4
3,017,964	-				-0.1
3,017,964	-				-2.0
3,017,964	-				+0.4
3,017,964	-				-0.3
3,017,967	+				-1.5
3,018,294	+				-0.4
3,018,498	+		BPHYT_RS13230	0.30	-0.7
3,018,529	-		BPHYT_RS13230	0.36	-0.7
3,018,592	-		BPHYT_RS13230	0.49	+0.5
3,018,660	+		BPHYT_RS13230	0.63	+0.1
3,018,660	+		BPHYT_RS13230	0.63	+1.3
3,018,661	-		BPHYT_RS13230	0.63	+1.0
3,018,684	+		BPHYT_RS13230	0.68	+0.9
3,018,685	-		BPHYT_RS13230	0.68	+0.2
3,018,685	-		BPHYT_RS13230	0.68	+1.8
3,018,705	+		BPHYT_RS13230	0.72	-1.8
3,018,705	+		BPHYT_RS13230	0.72	+0.3
3,018,706	-		BPHYT_RS13230	0.72	+1.0
3,018,706	-		BPHYT_RS13230	0.72	-0.2
3,018,724	-		BPHYT_RS13230	0.76	+0.4