Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12680

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12675 and BPHYT_RS12680 are separated by 216 nucleotidesBPHYT_RS12680 and BPHYT_RS12685 overlap by 4 nucleotides BPHYT_RS12675: BPHYT_RS12675 - enolase, at 2,889,981 to 2,891,264 _RS12675 BPHYT_RS12680: BPHYT_RS12680 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 2,891,481 to 2,892,335 _RS12680 BPHYT_RS12685: BPHYT_RS12685 - CTP synthase, at 2,892,332 to 2,894,005 _RS12685 Position (kb) 2891 2892 2893Strain fitness (log2 ratio) -3 -2 -1 0 1at 2891.309 kb on - strandat 2891.309 kb on - strandat 2891.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,891,309 - +1.3
2,891,309 - -1.7
2,891,309 - -2.9

Or see this region's nucleotide sequence