Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12215

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,788,432	+		BPHYT_RS12210	0.36	-0.8
2,788,478	-		BPHYT_RS12210	0.39	-0.6
2,788,576	-		BPHYT_RS12210	0.46	-2.0
2,788,576	-		BPHYT_RS12210	0.46	+1.7
2,788,576	-		BPHYT_RS12210	0.46	+0.1
2,788,636	+		BPHYT_RS12210	0.50	-0.3
2,788,637	-		BPHYT_RS12210	0.50	-3.2
2,788,637	-		BPHYT_RS12210	0.50	-3.0
2,789,047	+		BPHYT_RS12210	0.79	+0.9
2,789,048	-		BPHYT_RS12210	0.79	-0.2
2,789,053	+		BPHYT_RS12210	0.79	-1.2
2,789,054	-		BPHYT_RS12210	0.79	-4.0
2,789,372	-				-2.1
2,789,425	+		BPHYT_RS12215	0.11	+0.2
2,789,425	+		BPHYT_RS12215	0.11	+2.7
2,789,695	+		BPHYT_RS12215	0.68	-1.4
2,789,695	+		BPHYT_RS12215	0.68	+0.6
2,789,696	-		BPHYT_RS12215	0.68	+0.7
2,789,696	-		BPHYT_RS12215	0.68	+0.7
2,789,704	+		BPHYT_RS12215	0.70	-0.7
2,789,704	+		BPHYT_RS12215	0.70	+0.6
2,789,786	-				-0.1
2,790,767	+		BPHYT_RS12220	0.40	+0.2
2,790,767	+		BPHYT_RS12220	0.40	-1.4
2,790,767	+		BPHYT_RS12220	0.40	-0.0