Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11600

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,633,964	-				+0.8
2,634,172	+		BPHYT_RS11595	0.27	-2.3
2,634,845	-				+0.2
2,634,909	-				-0.6
2,634,927	-				+0.1
2,635,145	+		BPHYT_RS11600	0.17	+1.7
2,635,158	-		BPHYT_RS11600	0.18	+1.2
2,635,251	-		BPHYT_RS11600	0.25	+0.2
2,635,670	+		BPHYT_RS11600	0.60	+1.9
2,635,689	-		BPHYT_RS11600	0.62	+0.4
2,635,689	-		BPHYT_RS11600	0.62	+0.5
2,635,773	-		BPHYT_RS11600	0.69	-1.1
2,636,177	-				-0.1
2,636,427	-		BPHYT_RS11605	0.18	-1.0
2,636,427	-		BPHYT_RS11605	0.18	-0.0
2,636,436	+		BPHYT_RS11605	0.19	+1.1
2,636,606	+		BPHYT_RS11605	0.30	-0.1
2,636,607	-		BPHYT_RS11605	0.30	-0.2
2,636,607	-		BPHYT_RS11605	0.30	+0.8
2,636,607	-		BPHYT_RS11605	0.30	-3.2
2,636,619	-		BPHYT_RS11605	0.31	-0.3