Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11205

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,547,620	+		BPHYT_RS11200	0.83	-0.1
2,547,620	+		BPHYT_RS11200	0.83	-0.5
2,547,621	-		BPHYT_RS11200	0.83	-3.2
2,547,801	+				+0.9
2,547,803	+				+1.3
2,547,803	+				-3.0
2,547,803	+				-0.3
2,547,907	-				-0.3
2,548,024	-				+0.4
2,548,071	+				-1.3
2,548,229	-				-3.0
2,548,790	-		BPHYT_RS11205	0.25	-2.6
2,548,790	-		BPHYT_RS11205	0.25	-1.1
2,548,792	+		BPHYT_RS11205	0.26	-4.0
2,548,793	-		BPHYT_RS11205	0.26	-1.7
2,549,037	-		BPHYT_RS11205	0.49	-2.9
2,549,247	+		BPHYT_RS11205	0.69	+0.4
2,549,252	-		BPHYT_RS11205	0.70	-1.5
2,549,252	-		BPHYT_RS11205	0.70	-1.1
2,549,298	+		BPHYT_RS11205	0.74	-0.6
2,549,350	-		BPHYT_RS11205	0.79	-1.6
2,549,433	+		BPHYT_RS11205	0.87	-0.7
2,549,434	-		BPHYT_RS11205	0.87	-1.1
2,549,434	-		BPHYT_RS11205	0.87	-1.3
2,549,434	-		BPHYT_RS11205	0.87	-0.6
2,549,434	-		BPHYT_RS11205	0.87	-2.0
2,549,434	-		BPHYT_RS11205	0.87	-3.9
2,549,547	-				-1.0
2,549,704	-				-0.4
2,549,704	-				-1.6
2,549,760	-				-0.4
2,549,764	-				+0.6
2,549,764	-				+0.4
2,550,249	-		BPHYT_RS11210	0.49	-0.1
2,550,275	+		BPHYT_RS11210	0.51	-1.0
2,550,276	-		BPHYT_RS11210	0.51	+0.7