Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09225

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,088,009	+		BPHYT_RS09215	0.82	+0.0
2,088,010	-		BPHYT_RS09215	0.82	+0.1
2,088,184	+		BPHYT_RS09215	0.89	-0.7
2,088,184	+		BPHYT_RS09215	0.89	-0.7
2,088,184	+		BPHYT_RS09215	0.89	+0.6
2,088,185	-		BPHYT_RS09215	0.89	-1.3
2,088,207	-		BPHYT_RS09215	0.89	-1.7
2,088,504	-				-2.9
2,088,541	-				+1.9
2,088,914	-				+0.8
2,088,914	-				-1.1
2,088,992	-		BPHYT_RS09225	0.11	-1.4
2,089,028	-		BPHYT_RS09225	0.15	-0.7
2,089,066	+		BPHYT_RS09225	0.19	+0.6
2,089,066	+		BPHYT_RS09225	0.19	-1.3
2,089,067	-		BPHYT_RS09225	0.19	+0.2
2,089,516	-				-1.0
2,089,741	-				+0.6
2,089,911	+				+0.8
2,089,911	+				+0.7
2,090,010	-				-0.2
2,090,010	-				-0.2
2,090,034	+				+0.9
2,090,035	-				-3.2
2,090,216	+		BPHYT_RS09230	0.20	-0.4
2,090,275	-		BPHYT_RS09230	0.26	-1.0
2,090,275	-		BPHYT_RS09230	0.26	-1.9