Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08030

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,829,503	-		BPHYT_RS08020	0.83	+0.3
1,829,637	+				+1.4
1,829,637	+				+1.5
1,829,640	+				-1.0
1,829,640	+				-1.2
1,829,641	-				-0.1
1,829,747	+				-0.5
1,829,748	-				-2.1
1,829,764	-				-0.2
1,829,764	-				-0.8
1,829,859	-				-2.3
1,829,859	-				-0.2
1,829,859	-				-1.3
1,829,918	+		BPHYT_RS08025	0.17	-0.5
1,829,922	+		BPHYT_RS08025	0.19	+0.6
1,829,922	+		BPHYT_RS08025	0.19	-0.9
1,829,922	+		BPHYT_RS08025	0.19	-0.4
1,829,922	+		BPHYT_RS08025	0.19	+0.6
1,829,923	-		BPHYT_RS08025	0.19	-0.1
1,829,923	-		BPHYT_RS08025	0.19	+0.1
1,829,923	-		BPHYT_RS08025	0.19	+0.0
1,830,170	-				+0.1
1,830,175	+				-1.9
1,830,175	+				-1.0
1,830,175	+				-0.7
1,830,175	+				-1.1
1,830,176	-				-0.8
1,830,176	-				-0.4
1,830,176	-				-1.0
1,830,176	-				-2.1
1,830,181	-				+0.4
1,830,181	-				+0.2
1,830,206	-				-1.8
1,830,209	+				-0.3
1,830,210	-				-3.1
1,830,212	+				-2.3
1,830,213	-				-2.2
1,830,216	-				+2.1
1,830,216	-				-1.5
1,830,374	+				-0.3
1,830,376	-				-1.8
1,830,376	-				-0.3
1,830,575	+		BPHYT_RS08030	0.39	-0.8
1,830,575	+		BPHYT_RS08030	0.39	-2.4
1,830,576	-		BPHYT_RS08030	0.39	+0.8
1,830,576	-		BPHYT_RS08030	0.39	-2.3
1,830,680	+		BPHYT_RS08030	0.65	-4.9
1,830,839	+				-1.0
1,830,839	+				-0.7
1,830,925	+				-0.1
1,831,048	-				+1.4
1,831,048	-				-0.2
1,831,250	-				+0.9
1,831,403	+		BPHYT_RS08035	0.19	-2.4
1,831,559	-		BPHYT_RS08035	0.37	-1.2
1,831,559	-		BPHYT_RS08035	0.37	+0.0
1,831,587	+		BPHYT_RS08035	0.40	+0.1
1,831,587	+		BPHYT_RS08035	0.40	-1.0
1,831,589	+		BPHYT_RS08035	0.40	-0.1
1,831,592	-		BPHYT_RS08035	0.40	-0.5