Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07405 and BPHYT_RS07410 are separated by 63 nucleotides BPHYT_RS07410 and BPHYT_RS07415 are separated by 391 nucleotides BPHYT_RS07415 and BPHYT_RS07420 overlap by 1 nucleotides
BPHYT_RS07405: BPHYT_RS07405 - UDP-glucose 4-epimerase, at 1,683,801 to 1,684,823
_RS07405
BPHYT_RS07410: BPHYT_RS07410 - glucosamine--fructose-6-phosphate aminotransferase, at 1,684,887 to 1,686,704
_RS07410
BPHYT_RS07415: BPHYT_RS07415 - hypothetical protein, at 1,687,096 to 1,687,419
_RS07415
BPHYT_RS07420: BPHYT_RS07420 - hypothetical protein, at 1,687,419 to 1,687,637
_RS07420
Position (kb) 1684
1685
1686
1687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1684.194 kb on + strand, within BPHYT_RS07405 at 1684.416 kb on + strand, within BPHYT_RS07405 at 1684.609 kb on - strand, within BPHYT_RS07405 at 1684.610 kb on + strand, within BPHYT_RS07405 at 1684.610 kb on + strand, within BPHYT_RS07405 at 1684.822 kb on - strand at 1685.570 kb on - strand, within BPHYT_RS07410 at 1686.349 kb on - strand at 1686.507 kb on + strand, within BPHYT_RS07410 at 1686.508 kb on - strand, within BPHYT_RS07410 at 1687.059 kb on - strand at 1687.138 kb on + strand, within BPHYT_RS07415 at 1687.138 kb on + strand, within BPHYT_RS07415 at 1687.138 kb on + strand, within BPHYT_RS07415 at 1687.139 kb on - strand, within BPHYT_RS07415 at 1687.435 kb on - strand at 1687.572 kb on - strand, within BPHYT_RS07420
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,684,194 + BPHYT_RS07405 0.38 -0.4 1,684,416 + BPHYT_RS07405 0.60 +0.9 1,684,609 - BPHYT_RS07405 0.79 -1.5 1,684,610 + BPHYT_RS07405 0.79 -0.8 1,684,610 + BPHYT_RS07405 0.79 +0.3 1,684,822 - +0.5 1,685,570 - BPHYT_RS07410 0.38 -3.2 1,686,349 - +2.0 1,686,507 + BPHYT_RS07410 0.89 -0.9 1,686,508 - BPHYT_RS07410 0.89 -3.6 1,687,059 - -0.7 1,687,138 + BPHYT_RS07415 0.13 +0.2 1,687,138 + BPHYT_RS07415 0.13 +0.3 1,687,138 + BPHYT_RS07415 0.13 -0.3 1,687,139 - BPHYT_RS07415 0.13 -1.6 1,687,435 - +0.2 1,687,572 - BPHYT_RS07420 0.70 +1.3
Or see this region's nucleotide sequence