Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07340

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07335 and BPHYT_RS07340 are separated by 55 nucleotidesBPHYT_RS07340 and BPHYT_RS07345 are separated by 12 nucleotidesBPHYT_RS07345 and BPHYT_RS07350 overlap by 1 nucleotides BPHYT_RS07335: BPHYT_RS07335 - nitrate ABC transporter permease, at 1,663,509 to 1,664,576 _RS07335 BPHYT_RS07340: BPHYT_RS07340 - glyoxalase, at 1,664,632 to 1,665,237 _RS07340 BPHYT_RS07345: BPHYT_RS07345 - nitrate ABC transporter permease, at 1,665,250 to 1,665,993 _RS07345 BPHYT_RS07350: BPHYT_RS07350 - ABC transporter ATP-binding protein, at 1,665,993 to 1,666,844 _RS07350 Position (kb) 1664 1665 1666Strain fitness (log2 ratio) -1 0 1 2at 1663.737 kb on + strand, within BPHYT_RS07335at 1664.208 kb on + strand, within BPHYT_RS07335at 1664.209 kb on - strand, within BPHYT_RS07335at 1664.314 kb on - strand, within BPHYT_RS07335at 1664.556 kb on - strandat 1664.891 kb on - strand, within BPHYT_RS07340at 1664.945 kb on + strand, within BPHYT_RS07340at 1664.976 kb on + strand, within BPHYT_RS07340at 1665.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,663,737 + BPHYT_RS07335 0.21 -0.4
1,664,208 + BPHYT_RS07335 0.65 +1.3
1,664,209 - BPHYT_RS07335 0.66 +0.2
1,664,314 - BPHYT_RS07335 0.75 +1.5
1,664,556 - +1.1
1,664,891 - BPHYT_RS07340 0.43 +1.5
1,664,945 + BPHYT_RS07340 0.52 +2.6
1,664,976 + BPHYT_RS07340 0.57 -0.1
1,665,969 - -0.7

Or see this region's nucleotide sequence