Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07070 and BPHYT_RS07075 are separated by 10 nucleotides BPHYT_RS07075 and BPHYT_RS07080 are separated by 71 nucleotides BPHYT_RS07080 and BPHYT_RS07085 are separated by 231 nucleotides
BPHYT_RS07070: BPHYT_RS07070 - transcriptional regulator, at 1,598,927 to 1,599,838
_RS07070
BPHYT_RS07075: BPHYT_RS07075 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,599,849 to 1,600,259
_RS07075
BPHYT_RS07080: BPHYT_RS07080 - glutathione S-transferase, at 1,600,331 to 1,601,341
_RS07080
BPHYT_RS07085: BPHYT_RS07085 - LysR family transcriptional regulator, at 1,601,573 to 1,602,496
_RS07085
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1599.432 kb on - strand, within BPHYT_RS07070 at 1599.495 kb on - strand, within BPHYT_RS07070 at 1599.556 kb on - strand, within BPHYT_RS07070 at 1599.604 kb on + strand, within BPHYT_RS07070 at 1599.604 kb on + strand, within BPHYT_RS07070 at 1599.650 kb on + strand, within BPHYT_RS07070 at 1599.737 kb on + strand, within BPHYT_RS07070 at 1599.738 kb on - strand, within BPHYT_RS07070 at 1600.027 kb on + strand, within BPHYT_RS07075 at 1600.336 kb on + strand at 1600.459 kb on - strand, within BPHYT_RS07080 at 1600.728 kb on + strand, within BPHYT_RS07080 at 1601.170 kb on - strand, within BPHYT_RS07080 at 1601.301 kb on + strand at 1601.331 kb on - strand at 1601.439 kb on + strand at 1601.508 kb on + strand at 1601.509 kb on - strand at 1602.200 kb on + strand, within BPHYT_RS07085
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,599,432 - BPHYT_RS07070 0.55 +0.4 1,599,495 - BPHYT_RS07070 0.62 +0.2 1,599,556 - BPHYT_RS07070 0.69 +1.0 1,599,604 + BPHYT_RS07070 0.74 +1.2 1,599,604 + BPHYT_RS07070 0.74 +0.6 1,599,650 + BPHYT_RS07070 0.79 +1.2 1,599,737 + BPHYT_RS07070 0.89 +0.3 1,599,738 - BPHYT_RS07070 0.89 +0.4 1,600,027 + BPHYT_RS07075 0.43 +1.8 1,600,336 + +1.0 1,600,459 - BPHYT_RS07080 0.13 -0.6 1,600,728 + BPHYT_RS07080 0.39 +1.4 1,601,170 - BPHYT_RS07080 0.83 -2.2 1,601,301 + -2.0 1,601,331 - +0.6 1,601,439 + +1.0 1,601,508 + +0.5 1,601,509 - -0.6 1,602,200 + BPHYT_RS07085 0.68 -0.3
Or see this region's nucleotide sequence