Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06400

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,456,630	-		BPHYT_RS06400	0.43	+0.1
1,456,674	+		BPHYT_RS06400	0.48	-0.8
1,456,819	+		BPHYT_RS06400	0.63	-0.6
1,456,820	-		BPHYT_RS06400	0.63	-1.4
1,456,820	-		BPHYT_RS06400	0.63	+2.0
1,456,820	-		BPHYT_RS06400	0.63	+0.4
1,457,005	-		BPHYT_RS06400	0.83	+1.0
1,457,260	+				-2.2
1,457,261	-				-0.6
1,457,397	+				+0.3
1,457,398	-				-0.1
1,457,398	-				+0.8
1,457,770	-		BPHYT_RS06405	0.22	-2.8
1,457,775	+		BPHYT_RS06405	0.22	-3.8
1,457,775	+		BPHYT_RS06405	0.22	-2.7
1,457,872	-		BPHYT_RS06405	0.30	-2.5
1,457,929	+		BPHYT_RS06405	0.34	-2.9
1,457,930	-		BPHYT_RS06405	0.34	-1.2
1,458,024	-		BPHYT_RS06405	0.41	-2.5
1,458,029	-		BPHYT_RS06405	0.42	-0.7