Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06285 and BPHYT_RS06290 are separated by 49 nucleotides BPHYT_RS06290 and BPHYT_RS06295 are separated by 214 nucleotides BPHYT_RS06295 and BPHYT_RS06300 are separated by 57 nucleotides BPHYT_RS06300 and BPHYT_RS06305 are separated by 147 nucleotides
BPHYT_RS06285: BPHYT_RS06285 - diguanylate cyclase, at 1,433,556 to 1,434,056
_RS06285
BPHYT_RS06290: BPHYT_RS06290 - hypothetical protein, at 1,434,106 to 1,434,465
_RS06290
BPHYT_RS06295: BPHYT_RS06295 - diguanylate phosphodiesterase, at 1,434,680 to 1,436,377
_RS06295
BPHYT_RS06300: BPHYT_RS06300 - hypothetical protein, at 1,436,435 to 1,436,650
_RS06300
BPHYT_RS06305: BPHYT_RS06305 - small mechanosensitive ion channel protein MscS, at 1,436,798 to 1,437,607
_RS06305
Position (kb) 1434
1435
1436
1437 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1433.725 kb on - strand, within BPHYT_RS06285 at 1433.739 kb on - strand, within BPHYT_RS06285 at 1434.014 kb on - strand at 1434.101 kb on + strand at 1434.429 kb on - strand, within BPHYT_RS06290 at 1434.492 kb on + strand at 1434.564 kb on + strand at 1435.031 kb on + strand, within BPHYT_RS06295 at 1435.032 kb on - strand, within BPHYT_RS06295 at 1435.089 kb on - strand, within BPHYT_RS06295 at 1435.664 kb on + strand, within BPHYT_RS06295 at 1435.697 kb on - strand, within BPHYT_RS06295 at 1436.091 kb on - strand, within BPHYT_RS06295 at 1436.105 kb on + strand, within BPHYT_RS06295 at 1436.509 kb on - strand, within BPHYT_RS06300 at 1436.677 kb on + strand at 1436.772 kb on - strand at 1436.772 kb on - strand at 1436.873 kb on - strand at 1437.134 kb on - strand, within BPHYT_RS06305
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,433,725 - BPHYT_RS06285 0.34 -0.1 1,433,739 - BPHYT_RS06285 0.37 +0.0 1,434,014 - -0.7 1,434,101 + +0.8 1,434,429 - BPHYT_RS06290 0.90 +0.7 1,434,492 + -2.4 1,434,564 + -2.5 1,435,031 + BPHYT_RS06295 0.21 +2.0 1,435,032 - BPHYT_RS06295 0.21 +1.0 1,435,089 - BPHYT_RS06295 0.24 -0.7 1,435,664 + BPHYT_RS06295 0.58 +1.4 1,435,697 - BPHYT_RS06295 0.60 +0.5 1,436,091 - BPHYT_RS06295 0.83 +0.6 1,436,105 + BPHYT_RS06295 0.84 +0.8 1,436,509 - BPHYT_RS06300 0.34 +0.2 1,436,677 + -1.5 1,436,772 - +0.3 1,436,772 - -0.4 1,436,873 - -0.3 1,437,134 - BPHYT_RS06305 0.41 -0.2
Or see this region's nucleotide sequence