Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06115

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,388,942	+		BPHYT_RS06110	0.33	-0.3
1,389,046	-		BPHYT_RS06110	0.42	-0.7
1,389,046	-		BPHYT_RS06110	0.42	-0.5
1,389,128	+		BPHYT_RS06110	0.49	-4.5
1,389,128	+		BPHYT_RS06110	0.49	-2.8
1,389,129	-		BPHYT_RS06110	0.49	+2.2
1,389,170	+		BPHYT_RS06110	0.53	-2.5
1,389,290	+		BPHYT_RS06110	0.63	+0.2
1,389,291	-		BPHYT_RS06110	0.63	+0.0
1,389,332	+		BPHYT_RS06110	0.67	+0.3
1,389,333	-		BPHYT_RS06110	0.67	-0.4
1,389,615	+				-1.0
1,389,615	+				-0.8
1,389,615	+				-0.5
1,389,616	-				-1.1
1,389,617	+				-2.4
1,389,617	+				-2.2
1,389,617	+				+0.6
1,389,617	+				-0.4
1,389,618	-				-0.4
1,390,202	+				-0.5
1,390,229	+				-0.0
1,390,229	+				-1.6
1,390,230	-				-1.1
1,390,886	+		BPHYT_RS06115	0.22	+0.2
1,390,956	+		BPHYT_RS06115	0.23	-0.4
1,391,046	-		BPHYT_RS06115	0.25	-0.7
1,391,547	+		BPHYT_RS06115	0.36	-1.8
1,391,818	+		BPHYT_RS06115	0.42	+0.3
1,391,818	+		BPHYT_RS06115	0.42	+0.4
1,391,818	+		BPHYT_RS06115	0.42	+1.5
1,391,819	-		BPHYT_RS06115	0.42	+0.2
1,391,819	-		BPHYT_RS06115	0.42	-3.6
1,391,819	-		BPHYT_RS06115	0.42	-0.3
1,392,154	-		BPHYT_RS06115	0.50	+1.3
1,392,338	+		BPHYT_RS06115	0.54	-0.7
1,392,468	-		BPHYT_RS06115	0.57	-1.3
1,392,628	-		BPHYT_RS06115	0.61	+0.7
1,392,640	-		BPHYT_RS06115	0.61	-0.0
1,392,720	+		BPHYT_RS06115	0.63	+0.1
1,393,119	-		BPHYT_RS06115	0.72	+0.5
1,393,119	-		BPHYT_RS06115	0.72	-3.1
1,393,366	+		BPHYT_RS06115	0.77	+0.4
1,393,367	-		BPHYT_RS06115	0.77	+1.5
1,393,675	-		BPHYT_RS06115	0.84	-0.3
1,393,917	+		BPHYT_RS06115	0.90	+1.3
1,394,382	+				+0.1
1,394,382	+				-0.8
1,394,382	+				+0.4
1,394,382	+				-1.8
1,394,383	-				+0.3
1,394,383	-				-2.8
1,394,383	-				+1.5
1,394,386	-				-0.9
1,394,470	+				-0.0
1,394,470	+				-2.6
1,394,470	+				-1.3
1,394,470	+				-0.5
1,394,470	+				+1.0
1,394,471	-				-1.9
1,394,471	-				-2.7
1,394,471	-				+0.9
1,394,471	-				-0.8
1,394,471	-				-1.4
1,394,471	-				-0.4
1,394,471	-				-2.2
1,394,471	-				-0.4
1,394,762	-		BPHYT_RS06120	0.21	-0.4
1,394,864	-		BPHYT_RS06120	0.39	-1.9
1,394,864	-		BPHYT_RS06120	0.39	-1.6
1,395,243	+				+1.0
1,395,243	+				+0.5
1,395,244	-				+0.5