Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06110

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,387,712	+		BPHYT_RS06105	0.74	+0.7
1,387,713	-		BPHYT_RS06105	0.75	-0.4
1,388,012	-				-1.2
1,388,087	-				+0.7
1,388,101	+				+1.5
1,388,101	+				-1.7
1,388,102	-				-1.8
1,388,102	-				-2.0
1,388,194	+				+0.3
1,388,195	-				-1.2
1,388,195	-				-0.0
1,388,324	+				+0.4
1,388,324	+				-1.2
1,388,422	+				-1.1
1,388,422	+				-4.1
1,388,422	+				-0.7
1,388,422	+				+0.9
1,388,423	-				-2.9
1,388,423	-				-0.5
1,388,423	-				+0.5
1,388,627	+				-0.7
1,388,628	-				-2.4
1,388,628	-				+0.5
1,388,628	-				-2.3
1,388,648	+				+0.1
1,388,648	+				+0.9
1,388,649	-				+2.6
1,388,650	+				-2.1
1,388,650	+				-1.7
1,388,675	+				-3.6
1,388,676	-				-0.4
1,388,748	-		BPHYT_RS06110	0.16	+0.2
1,388,916	-		BPHYT_RS06110	0.31	-0.7
1,388,942	+		BPHYT_RS06110	0.33	-0.3
1,389,046	-		BPHYT_RS06110	0.42	-0.7
1,389,046	-		BPHYT_RS06110	0.42	-0.5
1,389,128	+		BPHYT_RS06110	0.49	-4.5
1,389,128	+		BPHYT_RS06110	0.49	-2.8
1,389,129	-		BPHYT_RS06110	0.49	+2.2
1,389,170	+		BPHYT_RS06110	0.53	-2.5
1,389,290	+		BPHYT_RS06110	0.63	+0.2
1,389,291	-		BPHYT_RS06110	0.63	+0.0
1,389,332	+		BPHYT_RS06110	0.67	+0.3
1,389,333	-		BPHYT_RS06110	0.67	-0.4
1,389,615	+				-1.0
1,389,615	+				-0.8
1,389,615	+				-0.5
1,389,616	-				-1.1
1,389,617	+				-2.4
1,389,617	+				-2.2
1,389,617	+				+0.6
1,389,617	+				-0.4
1,389,618	-				-0.4
1,390,202	+				-0.5
1,390,229	+				-0.0
1,390,229	+				-1.6
1,390,230	-				-1.1