Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06065

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,379,063	+		BPHYT_RS06060	0.51	-1.5
1,379,195	+		BPHYT_RS06060	0.67	-1.7
1,379,195	+		BPHYT_RS06060	0.67	+0.8
1,379,195	+		BPHYT_RS06060	0.67	+1.4
1,379,195	+		BPHYT_RS06060	0.67	+0.1
1,379,196	-		BPHYT_RS06060	0.67	-0.2
1,379,510	-				+0.7
1,379,510	-				+0.8
1,379,512	-				-1.9
1,379,512	-				-2.6
1,379,512	-				+0.9
1,379,853	-				-0.8
1,379,858	+				-4.2
1,379,859	-				-2.1
1,379,859	-				-1.1
1,379,859	-				-3.1
1,379,890	+				-1.7
1,379,890	+				+0.0
1,379,890	+				-0.0
1,379,891	-				-0.8
1,379,891	-				-0.1
1,379,891	-				-2.6
1,379,893	-				-1.9
1,379,949	+				-0.4
1,379,950	-				-1.8
1,379,950	-				-0.2
1,379,950	-				-0.1
1,379,956	+				+0.3
1,379,956	+				-0.9
1,379,956	+				-1.0
1,379,956	+				-1.7
1,379,957	-				-0.4
1,379,957	-				-3.4
1,380,016	+		BPHYT_RS06065	0.16	-1.6
1,380,085	+		BPHYT_RS06065	0.35	-1.8
1,380,085	+		BPHYT_RS06065	0.35	-1.4
1,380,086	-		BPHYT_RS06065	0.35	-0.1
1,380,086	-		BPHYT_RS06065	0.35	-1.1
1,380,134	+		BPHYT_RS06065	0.48	-0.6
1,380,134	+		BPHYT_RS06065	0.48	-0.6
1,380,170	+		BPHYT_RS06065	0.58	-0.1
1,380,194	+		BPHYT_RS06065	0.64	-0.1
1,380,194	+		BPHYT_RS06065	0.64	-0.7
1,380,195	-		BPHYT_RS06065	0.64	-0.3
1,380,278	+		BPHYT_RS06065	0.87	+0.4
1,380,278	+		BPHYT_RS06065	0.87	+0.1
1,380,278	+		BPHYT_RS06065	0.87	-0.2
1,380,281	+		BPHYT_RS06065	0.88	-2.7
1,380,281	+		BPHYT_RS06065	0.88	-0.8
1,380,282	-		BPHYT_RS06065	0.88	-1.0
1,380,374	+				-1.6
1,380,390	+				-0.8
1,380,390	+				-0.9
1,380,390	+				+0.5
1,380,391	-				-1.2
1,380,601	+		BPHYT_RS06070	0.56	-0.9
1,380,607	+				-1.0
1,380,625	+		BPHYT_RS06070	0.62	-0.8
1,380,727	+		BPHYT_RS06070	0.89	-0.5
1,380,727	+		BPHYT_RS06070	0.89	-0.4
1,380,727	+		BPHYT_RS06070	0.89	-1.3
1,380,728	-		BPHYT_RS06070	0.89	-0.1
1,380,728	-		BPHYT_RS06070	0.89	-2.0
1,380,729	+		BPHYT_RS06070	0.90	-5.1
1,380,730	-				+0.1
1,380,924	+				-2.2
1,380,924	+				-2.9
1,380,925	-				-3.3
1,381,110	-		BPHYT_RS06075	0.51	+0.7
1,381,110	-		BPHYT_RS06075	0.51	+0.4
1,381,110	-		BPHYT_RS06075	0.51	-0.6
1,381,150	-		BPHYT_RS06075	0.60	-1.7
1,381,150	-		BPHYT_RS06075	0.60	-0.8
1,381,324	+				+0.0
1,381,324	+				-0.7
1,381,324	+				-1.8