Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06045

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,373,842	-		BPHYT_RS06040	0.23	+1.5
1,374,059	-		BPHYT_RS06040	0.76	+1.4
1,374,059	-		BPHYT_RS06040	0.76	+0.7
1,374,103	+		BPHYT_RS06040	0.86	+0.5
1,374,138	+				+0.2
1,374,138	+				+1.7
1,374,142	+				+0.5
1,374,143	-				+0.9
1,374,143	-				+1.1
1,374,370	-				+0.4
1,374,395	+				+0.4
1,374,426	+				-2.4
1,374,461	+				+0.1
1,374,489	+				-0.2
1,374,490	-				+0.8
1,374,490	-				-3.6
1,374,599	-				-0.6
1,374,734	-		BPHYT_RS06045	0.10	-4.0
1,374,734	-		BPHYT_RS06045	0.10	-4.1
1,374,791	-		BPHYT_RS06045	0.16	-2.2
1,374,866	-		BPHYT_RS06045	0.24	-1.4
1,374,958	-				-0.7
1,374,960	+		BPHYT_RS06045	0.34	-3.2
1,374,961	-		BPHYT_RS06045	0.34	-2.8
1,374,961	-		BPHYT_RS06045	0.34	-3.7
1,374,967	-		BPHYT_RS06045	0.35	-2.1
1,374,967	-		BPHYT_RS06045	0.35	-3.4
1,375,050	+		BPHYT_RS06045	0.44	-3.6
1,375,059	+		BPHYT_RS06045	0.44	-2.9
1,375,252	-		BPHYT_RS06045	0.65	-3.8
1,375,447	-		BPHYT_RS06045	0.85	-0.9
1,375,447	-		BPHYT_RS06045	0.85	-2.4
1,375,557	+				-1.7
1,375,558	-				-2.1
1,375,745	+				-1.3
1,375,751	-				-1.8
1,375,951	-				-1.0
1,375,951	-				+0.3
1,375,974	-				+0.7
1,376,046	+				-1.7
1,376,046	+				+1.6
1,376,046	+				-0.6
1,376,047	-				-0.1
1,376,047	-				+0.2
1,376,322	-		BPHYT_RS06050	0.25	+0.4
1,376,323	+		BPHYT_RS06050	0.25	+0.0
1,376,323	+		BPHYT_RS06050	0.25	-0.2
1,376,323	+		BPHYT_RS06050	0.25	-1.9
1,376,376	-		BPHYT_RS06050	0.29	-0.9