Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05925

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,342,689	+		BPHYT_RS05915	0.66	-1.1
1,342,689	+		BPHYT_RS05915	0.66	+0.0
1,342,689	+		BPHYT_RS05915	0.66	+0.6
1,342,690	-		BPHYT_RS05915	0.67	+1.4
1,342,723	+		BPHYT_RS05915	0.84	-2.8
1,342,724	-		BPHYT_RS05915	0.84	-0.6
1,342,725	+		BPHYT_RS05915	0.85	+2.0
1,342,726	-		BPHYT_RS05915	0.85	+2.9
1,342,726	-		BPHYT_RS05915	0.85	-2.7
1,342,726	-		BPHYT_RS05915	0.85	-2.9
1,342,769	-				+1.1
1,342,827	+				+0.0
1,342,878	+				+0.5
1,342,879	-				+0.1
1,342,935	+				-1.3
1,342,935	+				+0.1
1,342,936	-				+0.7
1,342,936	-				+0.3
1,342,936	-				+0.3
1,343,436	+		BPHYT_RS05920	0.89	-0.2
1,343,437	-		BPHYT_RS05920	0.89	-3.3
1,343,437	-		BPHYT_RS05920	0.89	-0.4
1,343,478	+				+0.8
1,343,593	-				-0.0
1,343,593	-				+1.2
1,343,671	-				-0.1
1,343,868	+		BPHYT_RS05925	0.11	-0.9
1,343,869	-		BPHYT_RS05925	0.11	+1.3
1,343,962	-		BPHYT_RS05925	0.15	-1.9
1,344,394	-		BPHYT_RS05925	0.38	+2.4
1,344,829	-		BPHYT_RS05925	0.60	+2.2
1,344,829	-		BPHYT_RS05925	0.60	-0.9
1,344,939	+		BPHYT_RS05925	0.66	+0.3
1,345,010	+		BPHYT_RS05925	0.69	+4.2
1,345,228	-		BPHYT_RS05925	0.80	+2.6
1,345,706	-				+0.3
1,345,710	+				-0.7