Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05325

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,225,234	-				+2.7
1,225,234	-				-0.2
1,225,248	+				-0.1
1,225,249	-				-1.0
1,225,528	+		BPHYT_RS05320	0.38	-0.9
1,225,528	+		BPHYT_RS05320	0.38	-2.8
1,226,014	-				-0.9
1,226,281	+		BPHYT_RS05325	0.41	+0.1
1,226,281	+		BPHYT_RS05325	0.41	+0.6
1,226,342	-		BPHYT_RS05325	0.56	-0.4
1,226,439	+		BPHYT_RS05325	0.79	-0.9
1,226,460	-		BPHYT_RS05325	0.84	+1.8
1,226,510	-				-0.4
1,226,538	+				-0.6
1,226,814	-				+0.8
1,226,829	+				+1.0
1,226,830	-				-2.3
1,226,831	+				-0.3
1,226,831	+				-0.3
1,226,831	+				+0.5
1,226,895	-				+1.3
1,226,994	-				-0.6
1,227,014	+				+0.6
1,227,034	-				+0.4
1,227,284	-				-0.0
1,227,314	+				+0.5