Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04865 and BPHYT_RS04870 are separated by 42 nucleotides BPHYT_RS04870 and BPHYT_RS04875 overlap by 16 nucleotides BPHYT_RS04875 and BPHYT_RS04880 are separated by 29 nucleotides BPHYT_RS04880 and BPHYT_RS04885 are separated by 62 nucleotides
BPHYT_RS04865: BPHYT_RS04865 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,120,455 to 1,121,516
_RS04865
BPHYT_RS04870: BPHYT_RS04870 - cobalamin synthase, at 1,121,559 to 1,122,335
_RS04870
BPHYT_RS04875: BPHYT_RS04875 - alpha-ribazole phosphatase, at 1,122,320 to 1,122,910
_RS04875
BPHYT_RS04880: BPHYT_RS04880 - cobalamin-binding protein, at 1,122,940 to 1,123,842
_RS04880
BPHYT_RS04885: BPHYT_RS04885 - threonine-phosphate decarboxylase, at 1,123,905 to 1,124,954
_RS04885
Position (kb) 1122
1123 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1121.652 kb on + strand, within BPHYT_RS04870 at 1121.692 kb on + strand, within BPHYT_RS04870 at 1121.721 kb on + strand, within BPHYT_RS04870 at 1121.722 kb on - strand, within BPHYT_RS04870 at 1121.850 kb on + strand, within BPHYT_RS04870 at 1121.850 kb on + strand, within BPHYT_RS04870 at 1122.027 kb on + strand, within BPHYT_RS04870 at 1122.028 kb on - strand, within BPHYT_RS04870 at 1122.035 kb on + strand, within BPHYT_RS04870 at 1122.206 kb on - strand, within BPHYT_RS04870 at 1122.229 kb on - strand, within BPHYT_RS04870 at 1122.252 kb on + strand, within BPHYT_RS04870 at 1122.624 kb on + strand, within BPHYT_RS04875 at 1122.749 kb on + strand, within BPHYT_RS04875 at 1122.750 kb on - strand, within BPHYT_RS04875 at 1122.922 kb on + strand at 1122.922 kb on + strand at 1122.922 kb on + strand at 1122.923 kb on - strand at 1122.923 kb on - strand at 1122.928 kb on - strand at 1122.928 kb on - strand at 1123.316 kb on + strand, within BPHYT_RS04880 at 1123.379 kb on + strand, within BPHYT_RS04880 at 1123.688 kb on + strand, within BPHYT_RS04880 at 1123.688 kb on + strand, within BPHYT_RS04880 at 1123.688 kb on + strand, within BPHYT_RS04880 at 1123.689 kb on - strand, within BPHYT_RS04880 at 1123.865 kb on - strand at 1123.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,121,652 + BPHYT_RS04870 0.12 -0.6 1,121,692 + BPHYT_RS04870 0.17 -0.1 1,121,721 + BPHYT_RS04870 0.21 -0.4 1,121,722 - BPHYT_RS04870 0.21 -1.1 1,121,850 + BPHYT_RS04870 0.37 -1.2 1,121,850 + BPHYT_RS04870 0.37 +0.7 1,122,027 + BPHYT_RS04870 0.60 -0.9 1,122,028 - BPHYT_RS04870 0.60 +0.8 1,122,035 + BPHYT_RS04870 0.61 +0.2 1,122,206 - BPHYT_RS04870 0.83 -0.1 1,122,229 - BPHYT_RS04870 0.86 -1.2 1,122,252 + BPHYT_RS04870 0.89 -0.3 1,122,624 + BPHYT_RS04875 0.51 -3.4 1,122,749 + BPHYT_RS04875 0.73 -1.3 1,122,750 - BPHYT_RS04875 0.73 -2.1 1,122,922 + -0.1 1,122,922 + -1.3 1,122,922 + -0.2 1,122,923 - -0.0 1,122,923 - -0.3 1,122,928 - -0.9 1,122,928 - -3.0 1,123,316 + BPHYT_RS04880 0.42 -1.6 1,123,379 + BPHYT_RS04880 0.49 +1.2 1,123,688 + BPHYT_RS04880 0.83 +0.9 1,123,688 + BPHYT_RS04880 0.83 +0.1 1,123,688 + BPHYT_RS04880 0.83 -0.3 1,123,689 - BPHYT_RS04880 0.83 -0.1 1,123,865 - -0.1 1,123,865 - -0.8
Or see this region's nucleotide sequence