Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04820

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,110,629	-		BPHYT_RS04815	0.61	-0.7
1,110,682	+				-0.1
1,110,682	+		BPHYT_RS04815	0.64	+0.1
1,110,682	+		BPHYT_RS04815	0.64	+0.3
1,110,683	-		BPHYT_RS04815	0.64	-0.1
1,110,683	-		BPHYT_RS04815	0.64	-0.2
1,110,683	-		BPHYT_RS04815	0.64	+0.3
1,110,844	+		BPHYT_RS04815	0.74	-0.4
1,110,850	+		BPHYT_RS04815	0.74	-1.0
1,110,850	+		BPHYT_RS04815	0.74	-0.3
1,110,851	-		BPHYT_RS04815	0.74	+1.1
1,110,851	-		BPHYT_RS04815	0.74	+0.3
1,110,851	-		BPHYT_RS04815	0.74	-0.8
1,110,851	-		BPHYT_RS04815	0.74	-0.6
1,110,851	-		BPHYT_RS04815	0.74	+0.5
1,110,851	-		BPHYT_RS04815	0.74	+0.4
1,111,000	+		BPHYT_RS04815	0.83	-0.3
1,111,208	-				+0.6
1,111,208	-				-1.7
1,111,210	+				+0.2
1,111,210	+				-0.6
1,111,210	+				-1.1
1,111,210	+				+0.1
1,111,210	+				-0.8
1,111,211	-				-0.6
1,111,211	-				+1.0
1,111,270	+				+1.0
1,111,271	-				+2.0
1,111,271	-				+0.6
1,111,367	-				-0.8
1,111,417	+				+0.2
1,111,417	+				+0.3
1,111,418	-				-0.0
1,111,493	-				+0.1
1,111,777	+		BPHYT_RS04820	0.33	+2.2
1,111,777	+		BPHYT_RS04820	0.33	-1.7
1,111,862	+		BPHYT_RS04820	0.42	-3.2
1,111,862	+		BPHYT_RS04820	0.42	-2.9
1,111,862	+		BPHYT_RS04820	0.42	-1.8
1,111,862	+		BPHYT_RS04820	0.42	-3.5
1,111,862	+		BPHYT_RS04820	0.42	-4.6
1,111,863	-		BPHYT_RS04820	0.42	+2.9
1,112,152	+		BPHYT_RS04820	0.72	+1.1
1,112,249	+		BPHYT_RS04820	0.82	+0.7
1,112,261	+		BPHYT_RS04820	0.83	-0.8
1,112,419	+				-0.1
1,112,420	-				+2.4
1,112,443	-				-0.2
1,112,443	-				+0.2
1,112,443	-				-1.8
1,113,421	+				-1.6