Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04765 and BPHYT_RS04770 are separated by 41 nucleotides BPHYT_RS04770 and BPHYT_RS04775 are separated by 16 nucleotides BPHYT_RS04775 and BPHYT_RS04780 are separated by 77 nucleotides
BPHYT_RS04765: BPHYT_RS04765 - 2-deoxy-D-ribonate transporter (from data) , at 1,100,433 to 1,101,776
_RS04765
BPHYT_RS04770: BPHYT_RS04770 - short-chain dehydrogenase, at 1,101,818 to 1,102,558
_RS04770
BPHYT_RS04775: BPHYT_RS04775 - 2-deoxy-D-ribonate 3-dehydrogenase (from data) , at 1,102,575 to 1,103,366
_RS04775
BPHYT_RS04780: BPHYT_RS04780 - cobalamin biosynthesis protein CbiX, at 1,103,444 to 1,103,827
_RS04780
Position (kb)
1101
1102
1103 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.836 kb on - strand, within BPHYT_RS04765 at 1100.836 kb on - strand, within BPHYT_RS04765 at 1100.837 kb on + strand, within BPHYT_RS04765 at 1100.838 kb on - strand, within BPHYT_RS04765 at 1101.202 kb on - strand, within BPHYT_RS04765 at 1101.606 kb on + strand, within BPHYT_RS04765 at 1101.606 kb on + strand, within BPHYT_RS04765 at 1101.774 kb on + strand at 1102.263 kb on - strand, within BPHYT_RS04770 at 1102.263 kb on - strand, within BPHYT_RS04770 at 1102.277 kb on + strand, within BPHYT_RS04770 at 1102.309 kb on + strand, within BPHYT_RS04770 at 1102.477 kb on + strand, within BPHYT_RS04770 at 1102.477 kb on + strand, within BPHYT_RS04770 at 1102.478 kb on - strand, within BPHYT_RS04770 at 1102.481 kb on + strand, within BPHYT_RS04770 at 1102.482 kb on - strand, within BPHYT_RS04770 at 1102.482 kb on - strand, within BPHYT_RS04770 at 1102.513 kb on + strand at 1102.514 kb on - strand at 1102.619 kb on - strand at 1102.619 kb on - strand at 1102.692 kb on + strand, within BPHYT_RS04775 at 1102.693 kb on - strand, within BPHYT_RS04775 at 1102.694 kb on + strand, within BPHYT_RS04775 at 1102.789 kb on + strand, within BPHYT_RS04775 at 1102.941 kb on + strand, within BPHYT_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,100,835 + BPHYT_RS04765 0.30 -0.6 1,100,835 + BPHYT_RS04765 0.30 +0.2 1,100,835 + BPHYT_RS04765 0.30 -0.6 1,100,835 + BPHYT_RS04765 0.30 +1.2 1,100,836 - BPHYT_RS04765 0.30 -3.0 1,100,836 - BPHYT_RS04765 0.30 -1.5 1,100,837 + BPHYT_RS04765 0.30 -1.3 1,100,838 - BPHYT_RS04765 0.30 -2.5 1,101,202 - BPHYT_RS04765 0.57 +1.5 1,101,606 + BPHYT_RS04765 0.87 -0.2 1,101,606 + BPHYT_RS04765 0.87 -0.1 1,101,774 + +0.1 1,102,263 - BPHYT_RS04770 0.60 +1.3 1,102,263 - BPHYT_RS04770 0.60 -0.2 1,102,277 + BPHYT_RS04770 0.62 -0.4 1,102,309 + BPHYT_RS04770 0.66 +1.0 1,102,477 + BPHYT_RS04770 0.89 +0.7 1,102,477 + BPHYT_RS04770 0.89 +0.5 1,102,478 - BPHYT_RS04770 0.89 -2.7 1,102,481 + BPHYT_RS04770 0.89 +1.7 1,102,482 - BPHYT_RS04770 0.90 +0.9 1,102,482 - BPHYT_RS04770 0.90 -0.3 1,102,513 + +0.1 1,102,514 - -0.1 1,102,619 - +0.6 1,102,619 - -0.8 1,102,692 + BPHYT_RS04775 0.15 -0.0 1,102,693 - BPHYT_RS04775 0.15 +2.9 1,102,694 + BPHYT_RS04775 0.15 +1.2 1,102,789 + BPHYT_RS04775 0.27 +0.3 1,102,941 + BPHYT_RS04775 0.46 -0.1
Or see this region's nucleotide sequence